Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0245

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0244 and DvMF_0245 are separated by 302 nucleotidesDvMF_0245 and DvMF_0246 are separated by 723 nucleotides DvMF_0244: DvMF_0244 - flagellin domain protein (RefSeq), at 276,388 to 277,284 _0244 DvMF_0245: DvMF_0245 - hypothetical protein (RefSeq), at 277,587 to 277,982 _0245 DvMF_0246: DvMF_0246 - protein of unknown function DUF1078 domain protein (RefSeq), at 278,706 to 280,343 _0246 Position (kb) 277 278Strain fitness (log2 ratio) -1 0 1at 276.594 kb on - strand, within DvMF_0244at 276.639 kb on + strand, within DvMF_0244at 276.666 kb on - strand, within DvMF_0244at 276.758 kb on + strand, within DvMF_0244at 276.834 kb on + strand, within DvMF_0244at 277.187 kb on - strand, within DvMF_0244at 277.205 kb on - strandat 277.241 kb on - strandat 277.438 kb on + strandat 277.486 kb on + strandat 277.500 kb on - strandat 277.504 kb on + strandat 277.504 kb on + strandat 277.512 kb on - strandat 277.852 kb on + strand, within DvMF_0245at 277.937 kb on + strand, within DvMF_0245at 278.166 kb on + strandat 278.177 kb on + strandat 278.506 kb on - strandat 278.537 kb on - strandat 278.759 kb on - strandat 278.932 kb on + strand, within DvMF_0246at 278.945 kb on + strand, within DvMF_0246

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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276,594 - DvMF_0244 0.23 -0.1
276,639 + DvMF_0244 0.28 +0.3
276,666 - DvMF_0244 0.31 +1.6
276,758 + DvMF_0244 0.41 -0.0
276,834 + DvMF_0244 0.50 +0.3
277,187 - DvMF_0244 0.89 -1.3
277,205 - +1.3
277,241 - -0.3
277,438 + +0.9
277,486 + +0.4
277,500 - -0.5
277,504 + -0.7
277,504 + +0.6
277,512 - +0.9
277,852 + DvMF_0245 0.67 +0.3
277,937 + DvMF_0245 0.88 -0.1
278,166 + +0.8
278,177 + +0.6
278,506 - +0.7
278,537 - +1.2
278,759 - +0.6
278,932 + DvMF_0246 0.14 +1.2
278,945 + DvMF_0246 0.15 +1.3

Or see this region's nucleotide sequence