Experiment: 10 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0113 and DvMF_0114 are separated by 22 nucleotides DvMF_0114 and DvMF_0115 are separated by 17 nucleotides DvMF_0115 and DvMF_0116 are separated by 402 nucleotides
DvMF_0113: DvMF_0113 - hypothetical protein (RefSeq), at 124,755 to 125,330
_0113
DvMF_0114: DvMF_0114 - hypothetical protein (RefSeq), at 125,353 to 125,619
_0114
DvMF_0115: DvMF_0115 - hypothetical protein (RefSeq), at 125,637 to 126,578
_0115
DvMF_0116: DvMF_0116 - ferric uptake regulator, Fur family (RefSeq), at 126,981 to 127,409
_0116
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1 at 124.789 kb on + strand at 124.854 kb on + strand, within DvMF_0113 at 124.869 kb on - strand, within DvMF_0113 at 125.031 kb on + strand, within DvMF_0113 at 125.032 kb on + strand, within DvMF_0113 at 125.035 kb on - strand, within DvMF_0113 at 125.209 kb on - strand, within DvMF_0113 at 125.270 kb on - strand, within DvMF_0113 at 125.398 kb on + strand, within DvMF_0114 at 125.485 kb on - strand, within DvMF_0114 at 125.719 kb on - strand at 125.762 kb on + strand, within DvMF_0115 at 125.875 kb on + strand, within DvMF_0115 at 126.089 kb on - strand, within DvMF_0115 at 126.463 kb on - strand, within DvMF_0115 at 126.481 kb on + strand, within DvMF_0115 at 126.514 kb on + strand at 126.999 kb on + strand at 127.234 kb on - strand, within DvMF_0116 at 127.252 kb on - strand, within DvMF_0116 at 127.287 kb on - strand, within DvMF_0116 at 127.311 kb on + strand, within DvMF_0116 at 127.314 kb on - strand, within DvMF_0116 at 127.457 kb on + strand at 127.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 10 day starvation, 37C remove 124,789 + +0.5 124,854 + DvMF_0113 0.17 +0.9 124,869 - DvMF_0113 0.20 +0.9 125,031 + DvMF_0113 0.48 +0.9 125,032 + DvMF_0113 0.48 +0.4 125,035 - DvMF_0113 0.49 +1.1 125,209 - DvMF_0113 0.79 +1.1 125,270 - DvMF_0113 0.89 +0.9 125,398 + DvMF_0114 0.17 +0.5 125,485 - DvMF_0114 0.49 +0.5 125,719 - +0.5 125,762 + DvMF_0115 0.13 +0.8 125,875 + DvMF_0115 0.25 +0.0 126,089 - DvMF_0115 0.48 +0.8 126,463 - DvMF_0115 0.88 +0.7 126,481 + DvMF_0115 0.90 +1.0 126,514 + -1.9 126,999 + +1.7 127,234 - DvMF_0116 0.59 +0.6 127,252 - DvMF_0116 0.63 +0.3 127,287 - DvMF_0116 0.71 -0.1 127,311 + DvMF_0116 0.77 +1.3 127,314 - DvMF_0116 0.78 +0.4 127,457 + +0.6 127,488 - +0.9
Or see this region's nucleotide sequence