Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0111

Experiment: 10 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0110 and clpX are separated by 7 nucleotidesclpX and DvMF_0112 are separated by 118 nucleotides DvMF_0110: DvMF_0110 - ATP-dependent Clp protease, proteolytic subunit ClpP (RefSeq), at 119,625 to 120,230 _0110 DvMF_0111: clpX - ATP-dependent protease ATP-binding subunit ClpX (RefSeq), at 120,238 to 121,776 clpX DvMF_0112: DvMF_0112 - ATP-dependent protease La (RefSeq), at 121,895 to 124,357 _0112 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1at 119.270 kb on - strandat 119.875 kb on - strand, within DvMF_0110at 120.025 kb on - strand, within DvMF_0110at 120.201 kb on - strandat 120.240 kb on + strandat 120.435 kb on + strand, within clpXat 121.199 kb on + strand, within clpXat 121.982 kb on + strandat 122.203 kb on - strand, within DvMF_0112at 122.307 kb on - strand, within DvMF_0112at 122.336 kb on + strand, within DvMF_0112at 122.620 kb on + strand, within DvMF_0112at 122.628 kb on - strand, within DvMF_0112at 122.687 kb on - strand, within DvMF_0112

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Per-strain Table

Position Strand Gene LocusTag Fraction 10 day starvation, 37C
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119,270 - -0.2
119,875 - DvMF_0110 0.41 +0.8
120,025 - DvMF_0110 0.66 -0.9
120,201 - -0.1
120,240 + +0.7
120,435 + clpX DvMF_0111 0.13 -1.4
121,199 + clpX DvMF_0111 0.62 -2.4
121,982 + -0.4
122,203 - DvMF_0112 0.13 +1.6
122,307 - DvMF_0112 0.17 +0.9
122,336 + DvMF_0112 0.18 -1.1
122,620 + DvMF_0112 0.29 -0.2
122,628 - DvMF_0112 0.30 -0.7
122,687 - DvMF_0112 0.32 +0.5

Or see this region's nucleotide sequence