Strain Fitness in Shewanella loihica PV-4 around Shew_3610

Experiment: Zinc 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3608 and Shew_3609 are separated by 78 nucleotidesShew_3609 and Shew_3610 are separated by 20 nucleotidesShew_3610 and Shew_3611 are separated by 1 nucleotides Shew_3608: Shew_3608 - hypothetical protein (RefSeq), at 4,306,884 to 4,307,174 _3608 Shew_3609: Shew_3609 - type II secretion system protein N (RefSeq), at 4,307,253 to 4,308,014 _3609 Shew_3610: Shew_3610 - general secretion pathway M protein (RefSeq), at 4,308,035 to 4,308,511 _3610 Shew_3611: Shew_3611 - general secretion pathway protein L (RefSeq), at 4,308,513 to 4,309,703 _3611 Position (kb) 4308 4309Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4307.094 kb on + strand, within Shew_3608at 4307.322 kb on + strandat 4307.398 kb on + strand, within Shew_3609at 4307.431 kb on - strand, within Shew_3609at 4307.849 kb on + strand, within Shew_3609at 4308.071 kb on + strandat 4308.206 kb on - strand, within Shew_3610at 4308.350 kb on + strand, within Shew_3610at 4308.475 kb on + strandat 4308.495 kb on + strandat 4308.530 kb on - strandat 4308.829 kb on + strand, within Shew_3611at 4308.836 kb on - strand, within Shew_3611at 4309.378 kb on - strand, within Shew_3611

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.8 mM
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4,307,094 + Shew_3608 0.72 +1.1
4,307,322 + +0.8
4,307,398 + Shew_3609 0.19 -0.4
4,307,431 - Shew_3609 0.23 +0.1
4,307,849 + Shew_3609 0.78 -3.6
4,308,071 + -3.0
4,308,206 - Shew_3610 0.36 -2.4
4,308,350 + Shew_3610 0.66 -1.6
4,308,475 + -2.0
4,308,495 + -1.6
4,308,530 - +2.0
4,308,829 + Shew_3611 0.27 -1.4
4,308,836 - Shew_3611 0.27 -2.2
4,309,378 - Shew_3611 0.73 -3.5

Or see this region's nucleotide sequence