Experiment: Zinc 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3162 and Shew_3163 are separated by 259 nucleotides Shew_3163 and Shew_3164 are separated by 60 nucleotides Shew_3164 and Shew_3165 overlap by 8 nucleotides
Shew_3162: Shew_3162 - hypothetical protein (RefSeq), at 3,762,993 to 3,766,559
_3162
Shew_3163: Shew_3163 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 3,766,819 to 3,767,886
_3163
Shew_3164: Shew_3164 - ABC transporter-related protein (RefSeq), at 3,767,947 to 3,768,672
_3164
Shew_3165: Shew_3165 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,768,665 to 3,769,345
_3165
Position (kb)
3766
3767
3768 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3766.045 kb on + strand, within Shew_3162 at 3766.071 kb on - strand, within Shew_3162 at 3766.139 kb on - strand, within Shew_3162 at 3766.173 kb on + strand, within Shew_3162 at 3766.181 kb on - strand, within Shew_3162 at 3766.472 kb on + strand at 3766.478 kb on + strand at 3766.635 kb on + strand at 3766.883 kb on - strand at 3767.222 kb on - strand, within Shew_3163 at 3767.369 kb on - strand, within Shew_3163 at 3767.375 kb on + strand, within Shew_3163 at 3767.696 kb on - strand, within Shew_3163 at 3767.875 kb on + strand at 3768.278 kb on + strand, within Shew_3164 at 3768.335 kb on + strand, within Shew_3164 at 3768.595 kb on - strand, within Shew_3164 at 3768.806 kb on + strand, within Shew_3165
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 0.8 mM remove 3,766,045 + Shew_3162 0.86 -0.4 3,766,071 - Shew_3162 0.86 +0.3 3,766,139 - Shew_3162 0.88 -0.6 3,766,173 + Shew_3162 0.89 -0.3 3,766,181 - Shew_3162 0.89 +0.3 3,766,472 + +0.5 3,766,478 + -0.2 3,766,635 + +0.3 3,766,883 - -3.2 3,767,222 - Shew_3163 0.38 -0.2 3,767,369 - Shew_3163 0.51 -1.9 3,767,375 + Shew_3163 0.52 -0.2 3,767,696 - Shew_3163 0.82 -0.5 3,767,875 + -0.3 3,768,278 + Shew_3164 0.46 -0.3 3,768,335 + Shew_3164 0.53 +0.0 3,768,595 - Shew_3164 0.89 -0.4 3,768,806 + Shew_3165 0.21 -0.0
Or see this region's nucleotide sequence