Strain Fitness in Shewanella loihica PV-4 around Shew_2947

Experiment: Zinc 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2945 and Shew_2946 are separated by 121 nucleotidesShew_2946 and Shew_2947 are separated by 149 nucleotidesShew_2947 and Shew_2948 are separated by 146 nucleotides Shew_2945: Shew_2945 - CDP-diacylglycerol--serineO-phosphatidyltransferase (RefSeq), at 3,490,137 to 3,490,973 _2945 Shew_2946: Shew_2946 - hypothetical protein (RefSeq), at 3,491,095 to 3,491,550 _2946 Shew_2947: Shew_2947 - hypothetical protein (RefSeq), at 3,491,700 to 3,492,017 _2947 Shew_2948: Shew_2948 - ATPase (RefSeq), at 3,492,164 to 3,494,737 _2948 Position (kb) 3491 3492 3493Strain fitness (log2 ratio) -2 -1 0 1 2at 3490.726 kb on - strand, within Shew_2945at 3490.981 kb on + strandat 3490.982 kb on - strandat 3491.077 kb on - strandat 3491.077 kb on - strandat 3491.089 kb on - strandat 3491.134 kb on + strandat 3491.156 kb on - strand, within Shew_2946at 3491.294 kb on + strand, within Shew_2946at 3491.328 kb on - strand, within Shew_2946at 3491.379 kb on + strand, within Shew_2946at 3491.382 kb on - strand, within Shew_2946at 3491.387 kb on - strand, within Shew_2946at 3491.515 kb on - strandat 3491.943 kb on + strand, within Shew_2947at 3491.956 kb on + strand, within Shew_2947at 3492.067 kb on - strandat 3492.580 kb on + strand, within Shew_2948at 3492.672 kb on + strand, within Shew_2948at 3492.906 kb on - strand, within Shew_2948at 3492.911 kb on - strand, within Shew_2948at 3492.911 kb on - strand, within Shew_2948at 3492.911 kb on - strand, within Shew_2948at 3492.911 kb on - strand, within Shew_2948

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.8 mM
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3,490,726 - Shew_2945 0.70 -0.2
3,490,981 + -0.8
3,490,982 - +0.3
3,491,077 - +0.6
3,491,077 - -0.4
3,491,089 - +1.1
3,491,134 + +0.3
3,491,156 - Shew_2946 0.13 -1.8
3,491,294 + Shew_2946 0.44 +0.6
3,491,328 - Shew_2946 0.51 -1.3
3,491,379 + Shew_2946 0.62 +0.7
3,491,382 - Shew_2946 0.63 -0.3
3,491,387 - Shew_2946 0.64 -0.5
3,491,515 - +0.0
3,491,943 + Shew_2947 0.76 -0.2
3,491,956 + Shew_2947 0.81 +0.2
3,492,067 - +1.9
3,492,580 + Shew_2948 0.16 +0.1
3,492,672 + Shew_2948 0.20 -0.4
3,492,906 - Shew_2948 0.29 +1.2
3,492,911 - Shew_2948 0.29 +0.0
3,492,911 - Shew_2948 0.29 -0.3
3,492,911 - Shew_2948 0.29 -2.0
3,492,911 - Shew_2948 0.29 -2.1

Or see this region's nucleotide sequence