Strain Fitness in Shewanella loihica PV-4 around Shew_2740

Experiment: Zinc 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2739 and Shew_2740 are separated by 561 nucleotidesShew_2740 and Shew_2741 are separated by 298 nucleotides Shew_2739: Shew_2739 - Fmu (Sun) domain-containing protein (RefSeq), at 3,235,811 to 3,237,238 _2739 Shew_2740: Shew_2740 - YfaZ family protein (RefSeq), at 3,237,800 to 3,238,333 _2740 Shew_2741: Shew_2741 - glutathione peroxidase (RefSeq), at 3,238,632 to 3,239,120 _2741 Position (kb) 3237 3238 3239Strain fitness (log2 ratio) -2 -1 0 1at 3236.961 kb on + strand, within Shew_2739at 3237.043 kb on - strand, within Shew_2739at 3237.577 kb on - strandat 3237.738 kb on + strandat 3237.755 kb on + strandat 3237.763 kb on - strandat 3238.064 kb on - strand, within Shew_2740at 3238.509 kb on - strandat 3238.532 kb on + strandat 3238.532 kb on + strandat 3238.540 kb on - strandat 3238.781 kb on + strand, within Shew_2741at 3238.781 kb on + strand, within Shew_2741at 3239.015 kb on + strand, within Shew_2741at 3239.050 kb on + strand, within Shew_2741

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.8 mM
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3,236,961 + Shew_2739 0.81 -0.1
3,237,043 - Shew_2739 0.86 +0.0
3,237,577 - -1.0
3,237,738 + -0.8
3,237,755 + +0.6
3,237,763 - -2.3
3,238,064 - Shew_2740 0.49 -2.1
3,238,509 - +0.6
3,238,532 + +0.3
3,238,532 + +0.0
3,238,540 - +0.5
3,238,781 + Shew_2741 0.30 -0.4
3,238,781 + Shew_2741 0.30 -0.7
3,239,015 + Shew_2741 0.78 -0.4
3,239,050 + Shew_2741 0.85 +0.4

Or see this region's nucleotide sequence