Strain Fitness in Shewanella loihica PV-4 around Shew_2478

Experiment: Zinc 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2477 and Shew_2478 overlap by 1 nucleotidesShew_2478 and Shew_2479 are separated by 502 nucleotides Shew_2477: Shew_2477 - MotA/TolQ/ExbB proton channel (RefSeq), at 2,911,186 to 2,912,541 _2477 Shew_2478: Shew_2478 - hypothetical protein (RefSeq), at 2,912,541 to 2,913,323 _2478 Shew_2479: Shew_2479 - methyltransferase type 11 (RefSeq), at 2,913,826 to 2,914,833 _2479 Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2913.482 kb on - strandat 2913.511 kb on - strandat 2913.757 kb on + strandat 2913.776 kb on - strandat 2914.057 kb on - strand, within Shew_2479

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.8 mM
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2,913,482 - -3.2
2,913,511 - -4.2
2,913,757 + -1.7
2,913,776 - +0.3
2,914,057 - Shew_2479 0.23 +0.5

Or see this region's nucleotide sequence