Strain Fitness in Shewanella loihica PV-4 around Shew_2204

Experiment: Zinc 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2202 and Shew_2203 overlap by 19 nucleotidesShew_2203 and Shew_2204 are separated by 28 nucleotidesShew_2204 and Shew_2205 are separated by 365 nucleotides Shew_2202: Shew_2202 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq), at 2,562,699 to 2,563,436 _2202 Shew_2203: Shew_2203 - imidazole glycerol phosphate synthase subunit HisF (RefSeq), at 2,563,418 to 2,564,191 _2203 Shew_2204: Shew_2204 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (RefSeq), at 2,564,220 to 2,564,840 _2204 Shew_2205: Shew_2205 - diguanylate cyclase (RefSeq), at 2,565,206 to 2,566,408 _2205 Position (kb) 2564 2565Strain fitness (log2 ratio) -2 -1 0 1at 2563.591 kb on - strand, within Shew_2203at 2563.902 kb on + strand, within Shew_2203at 2563.973 kb on - strand, within Shew_2203at 2564.354 kb on - strand, within Shew_2204at 2565.269 kb on + strandat 2565.506 kb on + strand, within Shew_2205at 2565.654 kb on - strand, within Shew_2205at 2565.654 kb on - strand, within Shew_2205

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.8 mM
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2,563,591 - Shew_2203 0.22 +0.4
2,563,902 + Shew_2203 0.63 +0.2
2,563,973 - Shew_2203 0.72 -1.4
2,564,354 - Shew_2204 0.22 -0.6
2,565,269 + -1.6
2,565,506 + Shew_2205 0.25 +0.9
2,565,654 - Shew_2205 0.37 -2.2
2,565,654 - Shew_2205 0.37 +0.9

Or see this region's nucleotide sequence