Experiment: Zinc 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2202 and Shew_2203 overlap by 19 nucleotides Shew_2203 and Shew_2204 are separated by 28 nucleotides Shew_2204 and Shew_2205 are separated by 365 nucleotides
Shew_2202: Shew_2202 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq), at 2,562,699 to 2,563,436
_2202
Shew_2203: Shew_2203 - imidazole glycerol phosphate synthase subunit HisF (RefSeq), at 2,563,418 to 2,564,191
_2203
Shew_2204: Shew_2204 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (RefSeq), at 2,564,220 to 2,564,840
_2204
Shew_2205: Shew_2205 - diguanylate cyclase (RefSeq), at 2,565,206 to 2,566,408
_2205
Position (kb)
2564
2565 Strain fitness (log2 ratio)
-2
-1
0
1 at 2563.591 kb on - strand, within Shew_2203 at 2563.902 kb on + strand, within Shew_2203 at 2563.973 kb on - strand, within Shew_2203 at 2564.354 kb on - strand, within Shew_2204 at 2565.269 kb on + strand at 2565.506 kb on + strand, within Shew_2205 at 2565.654 kb on - strand, within Shew_2205 at 2565.654 kb on - strand, within Shew_2205
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 0.8 mM remove 2,563,591 - Shew_2203 0.22 +0.4 2,563,902 + Shew_2203 0.63 +0.2 2,563,973 - Shew_2203 0.72 -1.4 2,564,354 - Shew_2204 0.22 -0.6 2,565,269 + -1.6 2,565,506 + Shew_2205 0.25 +0.9 2,565,654 - Shew_2205 0.37 -2.2 2,565,654 - Shew_2205 0.37 +0.9
Or see this region's nucleotide sequence