Experiment: Zinc 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1630 and Shew_1631 are separated by 75 nucleotides Shew_1631 and Shew_1632 are separated by 95 nucleotides Shew_1632 and Shew_1633 are separated by 3 nucleotides Shew_1633 and Shew_1634 overlap by 4 nucleotides
Shew_1630: Shew_1630 - transcription-repair coupling factor (RefSeq), at 1,862,893 to 1,866,375
_1630
Shew_1631: Shew_1631 - hypothetical protein (RefSeq), at 1,866,451 to 1,867,032
_1631
Shew_1632: Shew_1632 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,867,128 to 1,868,360
_1632
Shew_1633: Shew_1633 - lipoprotein releasing system, ATP-binding protein (RefSeq), at 1,868,364 to 1,869,065
_1633
Shew_1634: Shew_1634 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,869,062 to 1,870,315
_1634
Position (kb) 1867
1868
1869 Strain fitness (log2 ratio) -1
0
1 at 1866.327 kb on + strand at 1866.571 kb on + strand, within Shew_1631 at 1866.625 kb on - strand, within Shew_1631 at 1866.649 kb on + strand, within Shew_1631 at 1866.973 kb on - strand, within Shew_1631
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 0.8 mM remove 1,866,327 + -0.6 1,866,571 + Shew_1631 0.21 -1.2 1,866,625 - Shew_1631 0.30 -0.7 1,866,649 + Shew_1631 0.34 +0.1 1,866,973 - Shew_1631 0.90 -0.1
Or see this region's nucleotide sequence