Experiment: Zinc 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0576 and Shew_0577 are separated by 110 nucleotides Shew_0577 and argD are separated by 614 nucleotides
Shew_0576: Shew_0576 - peptidase S9 prolyl oligopeptidase (RefSeq), at 650,838 to 653,324
_0576
Shew_0577: Shew_0577 - putative signal transduction protein (RefSeq), at 653,435 to 654,580
_0577
Shew_0578: argD - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq), at 655,195 to 656,412
argD
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1 at 652.444 kb on + strand, within Shew_0576 at 652.444 kb on + strand, within Shew_0576 at 653.013 kb on + strand, within Shew_0576 at 653.112 kb on + strand at 653.137 kb on + strand at 653.392 kb on + strand at 654.024 kb on - strand, within Shew_0577 at 654.027 kb on + strand, within Shew_0577 at 654.035 kb on - strand, within Shew_0577 at 654.035 kb on - strand, within Shew_0577 at 654.118 kb on - strand, within Shew_0577 at 654.162 kb on - strand, within Shew_0577 at 654.308 kb on - strand, within Shew_0577 at 654.488 kb on - strand at 654.556 kb on - strand at 654.635 kb on - strand at 654.881 kb on - strand at 655.313 kb on - strand at 655.383 kb on - strand, within argD
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 0.8 mM remove 652,444 + Shew_0576 0.65 -0.2 652,444 + Shew_0576 0.65 -0.1 653,013 + Shew_0576 0.87 +0.4 653,112 + +0.2 653,137 + -1.1 653,392 + -0.4 654,024 - Shew_0577 0.51 -2.1 654,027 + Shew_0577 0.52 +0.4 654,035 - Shew_0577 0.52 -0.1 654,035 - Shew_0577 0.52 -1.3 654,118 - Shew_0577 0.60 -0.7 654,162 - Shew_0577 0.63 +0.1 654,308 - Shew_0577 0.76 -1.5 654,488 - -0.1 654,556 - -0.1 654,635 - -2.5 654,881 - -0.0 655,313 - -0.1 655,383 - argD Shew_0578 0.15 +0.2
Or see this region's nucleotide sequence