Strain Fitness in Shewanella loihica PV-4 around Shew_0133

Experiment: Zinc 0.8 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0131 and Shew_0132 are separated by 107 nucleotidesShew_0132 and Shew_0133 overlap by 10 nucleotidesShew_0133 and Shew_0134 are separated by 47 nucleotides Shew_0131: Shew_0131 - GCN5-related N-acetyltransferase (RefSeq), at 140,435 to 140,890 _0131 Shew_0132: Shew_0132 - TetR family transcriptional regulator (RefSeq), at 140,998 to 141,654 _0132 Shew_0133: Shew_0133 - phospholipid/glycerol acyltransferase (RefSeq), at 141,645 to 143,507 _0133 Shew_0134: Shew_0134 - tRNA 2-selenouridine synthase (RefSeq), at 143,555 to 144,673 _0134 Position (kb) 141 142 143 144Strain fitness (log2 ratio) -2 -1 0 1 2at 140.665 kb on + strand, within Shew_0131at 140.756 kb on - strand, within Shew_0131at 140.855 kb on + strandat 141.028 kb on - strandat 141.097 kb on - strand, within Shew_0132at 141.099 kb on + strand, within Shew_0132at 141.276 kb on - strand, within Shew_0132at 141.342 kb on + strand, within Shew_0132at 141.471 kb on + strand, within Shew_0132at 141.536 kb on + strand, within Shew_0132at 141.570 kb on + strand, within Shew_0132at 141.583 kb on - strand, within Shew_0132at 141.886 kb on + strand, within Shew_0133at 141.997 kb on + strand, within Shew_0133at 142.032 kb on - strand, within Shew_0133at 142.069 kb on + strand, within Shew_0133at 142.270 kb on - strand, within Shew_0133at 142.528 kb on + strand, within Shew_0133at 142.536 kb on - strand, within Shew_0133at 142.548 kb on + strand, within Shew_0133at 142.747 kb on - strand, within Shew_0133at 142.766 kb on - strand, within Shew_0133at 142.780 kb on - strand, within Shew_0133at 142.859 kb on + strand, within Shew_0133at 142.867 kb on - strand, within Shew_0133at 142.944 kb on - strand, within Shew_0133at 142.944 kb on - strand, within Shew_0133at 142.944 kb on - strand, within Shew_0133at 142.982 kb on - strand, within Shew_0133at 142.996 kb on + strand, within Shew_0133at 143.086 kb on - strand, within Shew_0133at 143.105 kb on + strand, within Shew_0133at 143.154 kb on - strand, within Shew_0133at 143.350 kb on - strandat 143.382 kb on - strandat 143.386 kb on + strandat 143.601 kb on - strandat 143.635 kb on - strandat 143.704 kb on + strand, within Shew_0134at 143.804 kb on - strand, within Shew_0134at 143.973 kb on + strand, within Shew_0134at 143.981 kb on - strand, within Shew_0134at 143.981 kb on - strand, within Shew_0134at 143.981 kb on - strand, within Shew_0134at 143.981 kb on - strand, within Shew_0134at 143.986 kb on - strand, within Shew_0134at 144.048 kb on + strand, within Shew_0134at 144.053 kb on + strand, within Shew_0134at 144.255 kb on - strand, within Shew_0134at 144.265 kb on + strand, within Shew_0134

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.8 mM
remove
140,665 + Shew_0131 0.50 -0.0
140,756 - Shew_0131 0.70 -0.0
140,855 + -1.5
141,028 - +0.1
141,097 - Shew_0132 0.15 -0.1
141,099 + Shew_0132 0.15 -0.2
141,276 - Shew_0132 0.42 +0.0
141,342 + Shew_0132 0.52 +0.4
141,471 + Shew_0132 0.72 +0.3
141,536 + Shew_0132 0.82 +0.5
141,570 + Shew_0132 0.87 +0.3
141,583 - Shew_0132 0.89 +1.7
141,886 + Shew_0133 0.13 +0.1
141,997 + Shew_0133 0.19 -0.3
142,032 - Shew_0133 0.21 -0.5
142,069 + Shew_0133 0.23 -2.2
142,270 - Shew_0133 0.34 -0.2
142,528 + Shew_0133 0.47 -0.5
142,536 - Shew_0133 0.48 -1.6
142,548 + Shew_0133 0.48 +0.2
142,747 - Shew_0133 0.59 -0.2
142,766 - Shew_0133 0.60 -1.1
142,780 - Shew_0133 0.61 -0.1
142,859 + Shew_0133 0.65 +2.1
142,867 - Shew_0133 0.66 +0.1
142,944 - Shew_0133 0.70 -0.6
142,944 - Shew_0133 0.70 -0.5
142,944 - Shew_0133 0.70 -0.4
142,982 - Shew_0133 0.72 -2.0
142,996 + Shew_0133 0.73 -0.6
143,086 - Shew_0133 0.77 -0.6
143,105 + Shew_0133 0.78 +0.0
143,154 - Shew_0133 0.81 +0.4
143,350 - -0.3
143,382 - +0.9
143,386 + -0.0
143,601 - -0.5
143,635 - -0.2
143,704 + Shew_0134 0.13 +0.1
143,804 - Shew_0134 0.22 +0.4
143,973 + Shew_0134 0.37 +1.1
143,981 - Shew_0134 0.38 +1.4
143,981 - Shew_0134 0.38 +0.2
143,981 - Shew_0134 0.38 +0.5
143,981 - Shew_0134 0.38 +0.8
143,986 - Shew_0134 0.39 +0.0
144,048 + Shew_0134 0.44 -0.3
144,053 + Shew_0134 0.45 -0.1
144,255 - Shew_0134 0.63 -1.1
144,265 + Shew_0134 0.63 +0.4

Or see this region's nucleotide sequence