Experiment: D-Cellobiose (C); no added vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0893 and Ga0059261_0894 are separated by 82 nucleotides Ga0059261_0894 and Ga0059261_0895 are separated by 60 nucleotides Ga0059261_0895 and Ga0059261_0896 overlap by 4 nucleotides Ga0059261_0896 and Ga0059261_0897 are separated by 61 nucleotides
Ga0059261_0893: Ga0059261_0893 - inosine-5'-monophosphate dehydrogenase, at 930,727 to 932,184
_0893
Ga0059261_0894: Ga0059261_0894 - hypothetical protein, at 932,267 to 932,671
_0894
Ga0059261_0895: Ga0059261_0895 - Protein of unknown function (DUF2809), at 932,732 to 933,115
_0895
Ga0059261_0896: Ga0059261_0896 - Citrate lyase beta subunit, at 933,112 to 933,930
_0896
Ga0059261_0897: Ga0059261_0897 - Membrane protease subunits, stomatin/prohibitin homologs, at 933,992 to 934,981
_0897
Position (kb) 933
934 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.184 kb on + strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.185 kb on - strand at 932.225 kb on + strand at 932.225 kb on + strand at 932.225 kb on + strand at 932.225 kb on + strand at 932.226 kb on - strand at 932.226 kb on - strand at 932.226 kb on - strand at 932.235 kb on + strand at 932.241 kb on + strand at 932.242 kb on - strand at 932.242 kb on - strand at 932.295 kb on + strand at 932.296 kb on - strand at 932.320 kb on + strand, within Ga0059261_0894 at 932.320 kb on + strand, within Ga0059261_0894 at 932.320 kb on + strand, within Ga0059261_0894 at 932.321 kb on - strand, within Ga0059261_0894 at 932.343 kb on - strand, within Ga0059261_0894 at 932.410 kb on + strand, within Ga0059261_0894 at 932.410 kb on + strand, within Ga0059261_0894 at 932.411 kb on - strand, within Ga0059261_0894 at 932.411 kb on - strand, within Ga0059261_0894 at 932.411 kb on - strand, within Ga0059261_0894 at 932.567 kb on - strand, within Ga0059261_0894 at 932.567 kb on - strand, within Ga0059261_0894 at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.721 kb on + strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.722 kb on - strand at 932.802 kb on + strand, within Ga0059261_0895 at 932.802 kb on + strand, within Ga0059261_0895 at 932.803 kb on - strand, within Ga0059261_0895 at 932.803 kb on - strand, within Ga0059261_0895 at 932.803 kb on - strand at 932.803 kb on - strand, within Ga0059261_0895 at 932.841 kb on - strand, within Ga0059261_0895 at 932.841 kb on - strand, within Ga0059261_0895 at 933.018 kb on + strand, within Ga0059261_0895 at 933.018 kb on + strand, within Ga0059261_0895 at 933.019 kb on - strand, within Ga0059261_0895 at 933.179 kb on + strand at 933.180 kb on - strand at 933.180 kb on - strand at 933.180 kb on - strand at 933.180 kb on - strand at 933.444 kb on + strand, within Ga0059261_0896 at 933.444 kb on + strand, within Ga0059261_0896 at 933.444 kb on + strand, within Ga0059261_0896 at 933.444 kb on + strand, within Ga0059261_0896 at 933.444 kb on + strand, within Ga0059261_0896 at 933.444 kb on + strand, within Ga0059261_0896 at 933.444 kb on + strand, within Ga0059261_0896 at 933.445 kb on - strand, within Ga0059261_0896 at 933.445 kb on - strand, within Ga0059261_0896 at 933.445 kb on - strand at 933.445 kb on - strand, within Ga0059261_0896 at 933.445 kb on - strand, within Ga0059261_0896 at 933.804 kb on + strand, within Ga0059261_0896 at 933.834 kb on + strand, within Ga0059261_0896 at 933.835 kb on - strand, within Ga0059261_0896 at 933.835 kb on - strand, within Ga0059261_0896 at 933.835 kb on - strand, within Ga0059261_0896 at 933.914 kb on + strand at 933.914 kb on + strand at 933.914 kb on + strand at 933.914 kb on + strand at 933.915 kb on - strand at 933.915 kb on - strand at 933.915 kb on - strand at 933.915 kb on - strand at 933.915 kb on - strand at 933.939 kb on + strand at 933.939 kb on + strand at 933.939 kb on + strand at 933.939 kb on + strand at 933.939 kb on + strand at 933.939 kb on + strand at 933.939 kb on + strand at 933.940 kb on - strand at 933.940 kb on - strand at 933.940 kb on - strand at 933.940 kb on - strand at 933.940 kb on - strand at 933.940 kb on - strand at 933.940 kb on - strand at 933.940 kb on - strand at 933.940 kb on - strand at 933.940 kb on - strand at 933.944 kb on + strand at 933.944 kb on + strand at 933.944 kb on + strand at 933.944 kb on + strand at 933.944 kb on + strand at 933.944 kb on + strand at 933.944 kb on + strand at 933.944 kb on + strand at 933.944 kb on + strand at 933.944 kb on + strand at 933.945 kb on - strand at 933.945 kb on - strand at 934.035 kb on + strand at 934.035 kb on + strand at 934.036 kb on - strand at 934.036 kb on - strand at 934.043 kb on + strand at 934.079 kb on + strand at 934.079 kb on + strand at 934.079 kb on + strand at 934.085 kb on + strand at 934.085 kb on + strand at 934.086 kb on - strand at 934.086 kb on - strand at 934.086 kb on - strand at 934.087 kb on + strand at 934.087 kb on + strand at 934.088 kb on - strand at 934.088 kb on - strand at 934.088 kb on - strand at 934.142 kb on + strand, within Ga0059261_0897 at 934.142 kb on + strand, within Ga0059261_0897 at 934.157 kb on + strand, within Ga0059261_0897 at 934.158 kb on - strand, within Ga0059261_0897 at 934.295 kb on + strand, within Ga0059261_0897 at 934.295 kb on + strand, within Ga0059261_0897 at 934.295 kb on + strand, within Ga0059261_0897 at 934.296 kb on - strand, within Ga0059261_0897 at 934.296 kb on - strand, within Ga0059261_0897 at 934.296 kb on - strand, within Ga0059261_0897 at 934.296 kb on - strand, within Ga0059261_0897 at 934.313 kb on + strand, within Ga0059261_0897 at 934.313 kb on + strand, within Ga0059261_0897 at 934.313 kb on + strand, within Ga0059261_0897 at 934.313 kb on + strand, within Ga0059261_0897 at 934.314 kb on - strand, within Ga0059261_0897 at 934.314 kb on - strand, within Ga0059261_0897 at 934.314 kb on - strand, within Ga0059261_0897 at 934.314 kb on - strand, within Ga0059261_0897 at 934.314 kb on - strand, within Ga0059261_0897 at 934.314 kb on - strand, within Ga0059261_0897 at 934.314 kb on - strand, within Ga0059261_0897 at 934.314 kb on - strand, within Ga0059261_0897 at 934.757 kb on + strand, within Ga0059261_0897 at 934.757 kb on + strand, within Ga0059261_0897 at 934.757 kb on + strand, within Ga0059261_0897 at 934.757 kb on + strand, within Ga0059261_0897 at 934.757 kb on + strand, within Ga0059261_0897 at 934.758 kb on - strand, within Ga0059261_0897 at 934.758 kb on - strand, within Ga0059261_0897 at 934.758 kb on - strand, within Ga0059261_0897 at 934.775 kb on + strand, within Ga0059261_0897 at 934.775 kb on + strand, within Ga0059261_0897 at 934.775 kb on + strand, within Ga0059261_0897 at 934.775 kb on + strand, within Ga0059261_0897 at 934.776 kb on - strand, within Ga0059261_0897 at 934.776 kb on - strand, within Ga0059261_0897 at 934.776 kb on - strand, within Ga0059261_0897 at 934.776 kb on - strand, within Ga0059261_0897
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins remove 932,184 + -1.2 932,184 + -3.1 932,184 + -2.9 932,184 + -4.0 932,184 + -1.9 932,184 + -3.1 932,184 + -1.8 932,184 + -1.9 932,184 + -2.5 932,184 + -4.2 932,184 + -2.6 932,184 + -3.4 932,184 + -3.7 932,185 - -2.6 932,185 - -2.3 932,185 - -3.0 932,185 - -2.6 932,185 - -2.9 932,185 - -2.9 932,185 - -1.9 932,185 - -2.6 932,185 - -1.4 932,185 - -1.7 932,225 + -2.8 932,225 + -0.8 932,225 + -3.5 932,225 + -2.8 932,226 - -2.4 932,226 - -1.4 932,226 - -1.6 932,235 + -3.7 932,241 + -2.2 932,242 - -1.4 932,242 - +0.4 932,295 + +2.5 932,296 - -0.8 932,320 + Ga0059261_0894 0.13 +0.0 932,320 + Ga0059261_0894 0.13 +0.7 932,320 + Ga0059261_0894 0.13 +0.0 932,321 - Ga0059261_0894 0.13 +1.1 932,343 - Ga0059261_0894 0.19 -0.3 932,410 + Ga0059261_0894 0.35 +0.4 932,410 + Ga0059261_0894 0.35 +1.3 932,411 - Ga0059261_0894 0.36 +0.4 932,411 - Ga0059261_0894 0.36 +1.1 932,411 - Ga0059261_0894 0.36 +0.7 932,567 - Ga0059261_0894 0.74 -0.7 932,567 - Ga0059261_0894 0.74 -0.1 932,721 + +1.2 932,721 + +0.6 932,721 + -0.4 932,721 + +0.2 932,721 + -2.8 932,721 + -0.5 932,721 + -1.9 932,721 + -1.2 932,721 + -0.3 932,722 - +0.1 932,722 - -0.5 932,722 - +0.6 932,722 - +1.3 932,722 - +0.7 932,722 - +0.8 932,722 - -0.4 932,722 - +0.9 932,722 - +0.2 932,802 + Ga0059261_0895 0.18 +0.7 932,802 + Ga0059261_0895 0.18 +0.2 932,803 - Ga0059261_0895 0.18 +1.5 932,803 - Ga0059261_0895 0.18 +0.6 932,803 - +1.9 932,803 - Ga0059261_0895 0.18 -0.6 932,841 - Ga0059261_0895 0.28 +2.1 932,841 - Ga0059261_0895 0.28 -0.1 933,018 + Ga0059261_0895 0.74 -1.2 933,018 + Ga0059261_0895 0.74 -0.6 933,019 - Ga0059261_0895 0.75 +0.2 933,179 + +1.1 933,180 - +1.4 933,180 - -2.1 933,180 - +0.7 933,180 - +1.6 933,444 + Ga0059261_0896 0.41 +0.6 933,444 + Ga0059261_0896 0.41 +1.5 933,444 + Ga0059261_0896 0.41 +1.9 933,444 + Ga0059261_0896 0.41 +0.3 933,444 + Ga0059261_0896 0.41 -0.6 933,444 + Ga0059261_0896 0.41 -0.2 933,444 + Ga0059261_0896 0.41 +1.3 933,445 - Ga0059261_0896 0.41 +0.3 933,445 - Ga0059261_0896 0.41 +0.8 933,445 - -2.1 933,445 - Ga0059261_0896 0.41 -1.2 933,445 - Ga0059261_0896 0.41 +0.7 933,804 + Ga0059261_0896 0.84 -2.9 933,834 + Ga0059261_0896 0.88 +0.5 933,835 - Ga0059261_0896 0.88 +1.0 933,835 - Ga0059261_0896 0.88 +0.8 933,835 - Ga0059261_0896 0.88 +0.4 933,914 + -2.6 933,914 + +1.7 933,914 + -0.5 933,914 + +0.2 933,915 - -0.2 933,915 - +1.8 933,915 - +1.0 933,915 - +0.3 933,915 - +1.3 933,939 + -0.0 933,939 + +1.0 933,939 + +1.6 933,939 + +0.7 933,939 + -0.0 933,939 + +0.1 933,939 + +0.3 933,940 - +0.7 933,940 - -2.2 933,940 - -1.6 933,940 - -3.0 933,940 - +0.9 933,940 - +0.2 933,940 - -2.5 933,940 - +0.9 933,940 - -1.1 933,940 - -1.9 933,944 + +1.1 933,944 + +1.3 933,944 + -0.3 933,944 + +1.4 933,944 + +0.3 933,944 + +1.1 933,944 + -0.9 933,944 + +1.5 933,944 + +0.3 933,944 + +0.6 933,945 - +0.2 933,945 - -0.7 934,035 + -2.4 934,035 + +0.5 934,036 - +2.1 934,036 - +0.9 934,043 + +1.4 934,079 + -2.6 934,079 + +0.3 934,079 + +1.4 934,085 + -1.2 934,085 + +0.6 934,086 - -1.2 934,086 - +1.1 934,086 - +0.0 934,087 + +0.4 934,087 + -0.7 934,088 - +2.9 934,088 - +0.8 934,088 - -2.3 934,142 + Ga0059261_0897 0.15 +1.2 934,142 + Ga0059261_0897 0.15 -0.3 934,157 + Ga0059261_0897 0.17 -0.2 934,158 - Ga0059261_0897 0.17 +0.3 934,295 + Ga0059261_0897 0.31 +0.2 934,295 + Ga0059261_0897 0.31 -1.5 934,295 + Ga0059261_0897 0.31 +0.9 934,296 - Ga0059261_0897 0.31 -0.5 934,296 - Ga0059261_0897 0.31 +1.0 934,296 - Ga0059261_0897 0.31 -0.1 934,296 - Ga0059261_0897 0.31 -0.7 934,313 + Ga0059261_0897 0.32 -0.3 934,313 + Ga0059261_0897 0.32 -0.1 934,313 + Ga0059261_0897 0.32 -0.6 934,313 + Ga0059261_0897 0.32 +0.4 934,314 - Ga0059261_0897 0.33 +0.5 934,314 - Ga0059261_0897 0.33 +0.6 934,314 - Ga0059261_0897 0.33 +0.6 934,314 - Ga0059261_0897 0.33 -1.5 934,314 - Ga0059261_0897 0.33 +0.6 934,314 - Ga0059261_0897 0.33 -0.5 934,314 - Ga0059261_0897 0.33 -0.5 934,314 - Ga0059261_0897 0.33 +0.9 934,757 + Ga0059261_0897 0.77 +0.2 934,757 + Ga0059261_0897 0.77 -0.0 934,757 + Ga0059261_0897 0.77 -0.2 934,757 + Ga0059261_0897 0.77 -3.0 934,757 + Ga0059261_0897 0.77 -0.2 934,758 - Ga0059261_0897 0.77 +0.2 934,758 - Ga0059261_0897 0.77 -0.5 934,758 - Ga0059261_0897 0.77 -0.9 934,775 + Ga0059261_0897 0.79 +2.0 934,775 + Ga0059261_0897 0.79 -0.1 934,775 + Ga0059261_0897 0.79 +0.1 934,775 + Ga0059261_0897 0.79 +1.0 934,776 - Ga0059261_0897 0.79 -0.1 934,776 - Ga0059261_0897 0.79 +0.9 934,776 - Ga0059261_0897 0.79 -0.6 934,776 - Ga0059261_0897 0.79 +0.9
Or see this region's nucleotide sequence