Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0853

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0851 and Ga0059261_0852 are separated by 288 nucleotidesGa0059261_0852 and Ga0059261_0853 are separated by 135 nucleotidesGa0059261_0853 and Ga0059261_0854 are separated by 35 nucleotides Ga0059261_0851: Ga0059261_0851 - Alpha/beta hydrolase family, at 891,255 to 892,214 _0851 Ga0059261_0852: Ga0059261_0852 - Transcriptional regulators, at 892,503 to 892,979 _0852 Ga0059261_0853: Ga0059261_0853 - peroxiredoxin, Ohr subfamily, at 893,115 to 893,540 _0853 Ga0059261_0854: Ga0059261_0854 - Arabinose efflux permease, at 893,576 to 894,859 _0854 Position (kb) 893 894Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.204 kb on - strandat 892.204 kb on - strandat 892.204 kb on - strandat 892.204 kb on - strandat 892.361 kb on + strandat 892.361 kb on + strandat 892.361 kb on + strandat 892.362 kb on - strandat 892.362 kb on - strandat 892.362 kb on - strandat 892.362 kb on - strandat 892.404 kb on - strandat 892.404 kb on - strandat 892.444 kb on + strandat 892.444 kb on + strandat 892.445 kb on - strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.450 kb on - strandat 892.450 kb on - strandat 892.538 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.849 kb on + strand, within Ga0059261_0852at 892.849 kb on + strand, within Ga0059261_0852at 892.849 kb on + strand, within Ga0059261_0852at 892.849 kb on + strand, within Ga0059261_0852at 892.850 kb on - strand, within Ga0059261_0852at 892.850 kb on - strand, within Ga0059261_0852at 892.850 kb on - strand, within Ga0059261_0852at 892.850 kb on - strand, within Ga0059261_0852at 892.858 kb on + strand, within Ga0059261_0852at 892.859 kb on - strand, within Ga0059261_0852at 892.891 kb on + strand, within Ga0059261_0852at 892.891 kb on + strand, within Ga0059261_0852at 892.891 kb on + strand, within Ga0059261_0852at 892.891 kb on + strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.922 kb on - strand, within Ga0059261_0852at 892.930 kb on + strand, within Ga0059261_0852at 892.930 kb on + strand, within Ga0059261_0852at 892.931 kb on - strand, within Ga0059261_0852at 892.931 kb on - strand, within Ga0059261_0852at 893.066 kb on + strandat 893.067 kb on - strandat 893.067 kb on - strandat 893.067 kb on - strandat 893.067 kb on - strandat 893.067 kb on - strandat 893.127 kb on + strandat 893.127 kb on + strandat 893.128 kb on - strandat 893.128 kb on - strandat 893.274 kb on + strand, within Ga0059261_0853at 893.487 kb on + strand, within Ga0059261_0853at 893.487 kb on + strand, within Ga0059261_0853at 893.488 kb on - strand, within Ga0059261_0853at 893.616 kb on + strandat 893.616 kb on + strandat 893.616 kb on + strandat 893.705 kb on - strand, within Ga0059261_0854at 893.841 kb on + strand, within Ga0059261_0854at 893.871 kb on + strand, within Ga0059261_0854at 893.872 kb on - strand, within Ga0059261_0854at 893.872 kb on - strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.968 kb on + strand, within Ga0059261_0854at 893.968 kb on + strand, within Ga0059261_0854at 893.969 kb on - strand, within Ga0059261_0854at 893.969 kb on - strand, within Ga0059261_0854at 894.132 kb on + strand, within Ga0059261_0854at 894.423 kb on + strand, within Ga0059261_0854at 894.423 kb on + strand, within Ga0059261_0854at 894.423 kb on + strand, within Ga0059261_0854at 894.423 kb on + strand, within Ga0059261_0854at 894.423 kb on + strand, within Ga0059261_0854at 894.423 kb on + strand, within Ga0059261_0854at 894.423 kb on + strand, within Ga0059261_0854at 894.424 kb on - strand, within Ga0059261_0854at 894.424 kb on - strand, within Ga0059261_0854at 894.424 kb on - strandat 894.424 kb on - strand, within Ga0059261_0854at 894.424 kb on - strand, within Ga0059261_0854at 894.424 kb on - strandat 894.424 kb on - strandat 894.459 kb on + strand, within Ga0059261_0854

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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892,203 + +0.1
892,203 + -0.4
892,203 + +0.2
892,203 + -0.4
892,203 + -0.3
892,203 + +0.3
892,204 - +0.7
892,204 - +0.3
892,204 - +1.3
892,204 - +0.3
892,361 + +1.0
892,361 + +0.2
892,361 + +0.2
892,362 - -0.1
892,362 - +0.2
892,362 - +0.5
892,362 - +0.9
892,404 - -0.7
892,404 - +0.9
892,444 + +0.2
892,444 + -0.7
892,445 - -1.5
892,449 + +0.2
892,449 + +0.8
892,449 + -0.9
892,449 + -0.2
892,449 + -0.5
892,449 + -0.7
892,450 - +1.1
892,450 - +0.1
892,538 + +0.3
892,546 + -0.4
892,546 + -0.8
892,546 + -0.6
892,546 + +0.2
892,546 + -0.1
892,546 + -1.3
892,546 + +1.1
892,547 - -3.2
892,547 - +0.4
892,547 - -2.7
892,547 - +1.3
892,547 - +0.3
892,547 - -1.1
892,849 + Ga0059261_0852 0.73 -2.7
892,849 + Ga0059261_0852 0.73 +0.5
892,849 + Ga0059261_0852 0.73 -1.5
892,849 + Ga0059261_0852 0.73 -0.5
892,850 - Ga0059261_0852 0.73 +0.5
892,850 - Ga0059261_0852 0.73 -0.1
892,850 - Ga0059261_0852 0.73 -3.6
892,850 - Ga0059261_0852 0.73 -0.4
892,858 + Ga0059261_0852 0.74 +0.1
892,859 - Ga0059261_0852 0.75 +0.5
892,891 + Ga0059261_0852 0.81 -0.6
892,891 + Ga0059261_0852 0.81 +0.3
892,891 + Ga0059261_0852 0.81 +0.4
892,891 + Ga0059261_0852 0.81 +0.4
892,892 - Ga0059261_0852 0.82 +1.7
892,892 - Ga0059261_0852 0.82 +1.0
892,892 - Ga0059261_0852 0.82 +1.6
892,892 - Ga0059261_0852 0.82 -1.9
892,892 - Ga0059261_0852 0.82 -0.1
892,922 - Ga0059261_0852 0.88 +1.7
892,930 + Ga0059261_0852 0.90 +0.3
892,930 + Ga0059261_0852 0.90 -0.8
892,931 - Ga0059261_0852 0.90 +1.0
892,931 - Ga0059261_0852 0.90 -0.4
893,066 + +0.5
893,067 - -1.4
893,067 - +0.8
893,067 - +3.0
893,067 - +0.2
893,067 - +0.4
893,127 + -0.7
893,127 + -1.0
893,128 - +1.1
893,128 - +1.2
893,274 + Ga0059261_0853 0.37 -0.2
893,487 + Ga0059261_0853 0.87 -1.4
893,487 + Ga0059261_0853 0.87 -1.2
893,488 - Ga0059261_0853 0.88 -0.3
893,616 + +0.8
893,616 + +0.4
893,616 + -0.5
893,705 - Ga0059261_0854 0.10 +0.6
893,841 + Ga0059261_0854 0.21 +1.5
893,871 + Ga0059261_0854 0.23 -0.7
893,872 - Ga0059261_0854 0.23 -1.8
893,872 - Ga0059261_0854 0.23 +0.1
893,907 + Ga0059261_0854 0.26 +0.7
893,907 + Ga0059261_0854 0.26 -1.5
893,907 + Ga0059261_0854 0.26 -0.4
893,907 + Ga0059261_0854 0.26 -0.4
893,907 + Ga0059261_0854 0.26 -0.9
893,908 - Ga0059261_0854 0.26 +0.6
893,908 - Ga0059261_0854 0.26 +0.5
893,908 - Ga0059261_0854 0.26 -1.1
893,908 - Ga0059261_0854 0.26 -0.0
893,908 - Ga0059261_0854 0.26 +1.2
893,968 + Ga0059261_0854 0.31 +1.0
893,968 + Ga0059261_0854 0.31 -3.4
893,969 - Ga0059261_0854 0.31 +0.4
893,969 - Ga0059261_0854 0.31 -0.2
894,132 + Ga0059261_0854 0.43 -0.7
894,423 + Ga0059261_0854 0.66 -0.1
894,423 + Ga0059261_0854 0.66 +2.0
894,423 + Ga0059261_0854 0.66 -0.8
894,423 + Ga0059261_0854 0.66 -0.3
894,423 + Ga0059261_0854 0.66 -0.0
894,423 + Ga0059261_0854 0.66 -1.4
894,423 + Ga0059261_0854 0.66 -0.7
894,424 - Ga0059261_0854 0.66 +0.1
894,424 - Ga0059261_0854 0.66 -2.5
894,424 - +2.2
894,424 - Ga0059261_0854 0.66 +0.1
894,424 - Ga0059261_0854 0.66 +0.6
894,424 - -0.3
894,424 - -0.4
894,459 + Ga0059261_0854 0.69 +0.2

Or see this region's nucleotide sequence