Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0658

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0656 and Ga0059261_0657 are separated by 17 nucleotidesGa0059261_0657 and Ga0059261_0658 are separated by 119 nucleotidesGa0059261_0658 and Ga0059261_0659 are separated by 4 nucleotidesGa0059261_0659 and Ga0059261_0660 are separated by 28 nucleotides Ga0059261_0656: Ga0059261_0656 - Predicted dehydrogenases and related proteins, at 696,766 to 697,797 _0656 Ga0059261_0657: Ga0059261_0657 - Uncharacterized protein conserved in bacteria, at 697,815 to 698,459 _0657 Ga0059261_0658: Ga0059261_0658 - Beta-lactamase class C and other penicillin binding proteins, at 698,579 to 699,859 _0658 Ga0059261_0659: Ga0059261_0659 - transcriptional regulator, HxlR family, at 699,864 to 700,310 _0659 Ga0059261_0660: Ga0059261_0660 - Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein), at 700,339 to 701,100 _0660 Position (kb) 698 699 700Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 697.733 kb on + strandat 697.733 kb on + strandat 697.733 kb on + strandat 697.733 kb on + strandat 697.733 kb on + strandat 697.734 kb on - strandat 697.734 kb on - strandat 697.734 kb on - strandat 697.734 kb on - strandat 697.766 kb on + strandat 697.916 kb on - strand, within Ga0059261_0657at 698.547 kb on + strandat 698.783 kb on + strand, within Ga0059261_0658at 698.783 kb on + strand, within Ga0059261_0658at 698.783 kb on + strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.786 kb on + strand, within Ga0059261_0658at 698.786 kb on + strand, within Ga0059261_0658at 698.786 kb on + strand, within Ga0059261_0658at 698.786 kb on + strand, within Ga0059261_0658at 698.787 kb on - strand, within Ga0059261_0658at 698.943 kb on - strand, within Ga0059261_0658at 699.068 kb on + strand, within Ga0059261_0658at 699.068 kb on + strand, within Ga0059261_0658at 699.069 kb on - strand, within Ga0059261_0658at 699.069 kb on - strand, within Ga0059261_0658at 699.203 kb on + strand, within Ga0059261_0658at 699.203 kb on + strand, within Ga0059261_0658at 699.203 kb on + strand, within Ga0059261_0658at 699.204 kb on - strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.274 kb on - strand, within Ga0059261_0658at 699.274 kb on - strand, within Ga0059261_0658at 699.274 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.477 kb on - strand, within Ga0059261_0658at 699.477 kb on - strand, within Ga0059261_0658at 699.477 kb on - strand, within Ga0059261_0658at 699.477 kb on - strand, within Ga0059261_0658at 699.529 kb on + strand, within Ga0059261_0658at 699.529 kb on + strand, within Ga0059261_0658at 699.529 kb on + strand, within Ga0059261_0658at 699.585 kb on + strand, within Ga0059261_0658at 699.824 kb on + strandat 699.824 kb on + strandat 699.825 kb on - strandat 699.825 kb on - strandat 699.825 kb on - strandat 699.825 kb on - strandat 699.836 kb on + strandat 699.836 kb on + strandat 699.836 kb on + strandat 699.836 kb on + strandat 699.836 kb on + strandat 700.163 kb on + strand, within Ga0059261_0659at 700.164 kb on - strand, within Ga0059261_0659at 700.205 kb on + strand, within Ga0059261_0659at 700.244 kb on + strand, within Ga0059261_0659at 700.245 kb on - strand, within Ga0059261_0659at 700.263 kb on - strand, within Ga0059261_0659at 700.264 kb on + strand, within Ga0059261_0659at 700.615 kb on + strand, within Ga0059261_0660at 700.789 kb on + strand, within Ga0059261_0660at 700.789 kb on + strand, within Ga0059261_0660at 700.789 kb on + strand, within Ga0059261_0660at 700.790 kb on - strand, within Ga0059261_0660at 700.790 kb on - strand, within Ga0059261_0660at 700.819 kb on + strand, within Ga0059261_0660at 700.819 kb on + strand, within Ga0059261_0660at 700.819 kb on + strand, within Ga0059261_0660at 700.819 kb on + strand, within Ga0059261_0660at 700.820 kb on - strandat 700.820 kb on - strand, within Ga0059261_0660at 700.820 kb on - strand, within Ga0059261_0660at 700.820 kb on - strand, within Ga0059261_0660

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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697,733 + +1.3
697,733 + +0.9
697,733 + -0.2
697,733 + -0.5
697,733 + +2.3
697,734 - -1.2
697,734 - -0.2
697,734 - +0.5
697,734 - +0.0
697,766 + +0.5
697,916 - Ga0059261_0657 0.16 +1.7
698,547 + -0.2
698,783 + Ga0059261_0658 0.16 -2.7
698,783 + Ga0059261_0658 0.16 +0.1
698,783 + Ga0059261_0658 0.16 +1.5
698,784 - Ga0059261_0658 0.16 -1.9
698,784 - Ga0059261_0658 0.16 -0.1
698,784 - Ga0059261_0658 0.16 +0.4
698,784 - Ga0059261_0658 0.16 -0.2
698,784 - Ga0059261_0658 0.16 +0.3
698,784 - Ga0059261_0658 0.16 -0.7
698,784 - Ga0059261_0658 0.16 +0.0
698,784 - Ga0059261_0658 0.16 -1.8
698,784 - Ga0059261_0658 0.16 -0.0
698,786 + Ga0059261_0658 0.16 -0.4
698,786 + Ga0059261_0658 0.16 -0.3
698,786 + Ga0059261_0658 0.16 -0.8
698,786 + Ga0059261_0658 0.16 +0.2
698,787 - Ga0059261_0658 0.16 +0.5
698,943 - Ga0059261_0658 0.28 -0.1
699,068 + Ga0059261_0658 0.38 +0.1
699,068 + Ga0059261_0658 0.38 +0.9
699,069 - Ga0059261_0658 0.38 -0.5
699,069 - Ga0059261_0658 0.38 -0.7
699,203 + Ga0059261_0658 0.49 -0.5
699,203 + Ga0059261_0658 0.49 +0.4
699,203 + Ga0059261_0658 0.49 -1.5
699,204 - Ga0059261_0658 0.49 +2.0
699,269 + Ga0059261_0658 0.54 +1.2
699,269 + Ga0059261_0658 0.54 -2.6
699,269 + Ga0059261_0658 0.54 -0.1
699,269 + Ga0059261_0658 0.54 -0.5
699,269 + Ga0059261_0658 0.54 +0.2
699,269 + Ga0059261_0658 0.54 -0.1
699,269 + Ga0059261_0658 0.54 -0.4
699,269 + Ga0059261_0658 0.54 -0.0
699,269 + Ga0059261_0658 0.54 +1.3
699,270 - Ga0059261_0658 0.54 +1.1
699,270 - Ga0059261_0658 0.54 +0.3
699,270 - Ga0059261_0658 0.54 +0.0
699,270 - Ga0059261_0658 0.54 -0.4
699,270 - Ga0059261_0658 0.54 +0.1
699,270 - Ga0059261_0658 0.54 +1.5
699,270 - Ga0059261_0658 0.54 +0.4
699,273 + Ga0059261_0658 0.54 -1.5
699,273 + Ga0059261_0658 0.54 -1.0
699,273 + Ga0059261_0658 0.54 -1.3
699,273 + Ga0059261_0658 0.54 +0.9
699,273 + Ga0059261_0658 0.54 +0.7
699,273 + Ga0059261_0658 0.54 +1.1
699,273 + Ga0059261_0658 0.54 +0.4
699,273 + Ga0059261_0658 0.54 +0.5
699,273 + Ga0059261_0658 0.54 -0.5
699,274 - Ga0059261_0658 0.54 -0.1
699,274 - Ga0059261_0658 0.54 -3.3
699,274 - Ga0059261_0658 0.54 -0.2
699,360 - Ga0059261_0658 0.61 -2.1
699,360 - Ga0059261_0658 0.61 +0.5
699,360 - Ga0059261_0658 0.61 +0.6
699,360 - Ga0059261_0658 0.61 +0.8
699,360 - Ga0059261_0658 0.61 +1.0
699,360 - Ga0059261_0658 0.61 +0.5
699,360 - Ga0059261_0658 0.61 -1.6
699,360 - Ga0059261_0658 0.61 -2.4
699,360 - Ga0059261_0658 0.61 +1.1
699,360 - Ga0059261_0658 0.61 -0.4
699,360 - Ga0059261_0658 0.61 +0.5
699,360 - Ga0059261_0658 0.61 +0.8
699,476 + Ga0059261_0658 0.70 -0.2
699,476 + Ga0059261_0658 0.70 +0.6
699,476 + Ga0059261_0658 0.70 -1.3
699,476 + Ga0059261_0658 0.70 +0.3
699,476 + Ga0059261_0658 0.70 -1.9
699,476 + Ga0059261_0658 0.70 -0.7
699,476 + Ga0059261_0658 0.70 +2.1
699,477 - Ga0059261_0658 0.70 +1.3
699,477 - Ga0059261_0658 0.70 +0.7
699,477 - Ga0059261_0658 0.70 -0.6
699,477 - Ga0059261_0658 0.70 -1.9
699,529 + Ga0059261_0658 0.74 +0.8
699,529 + Ga0059261_0658 0.74 -0.8
699,529 + Ga0059261_0658 0.74 -0.1
699,585 + Ga0059261_0658 0.79 +2.5
699,824 + +0.4
699,824 + +0.4
699,825 - -0.4
699,825 - +0.7
699,825 - -0.2
699,825 - +1.1
699,836 + -1.0
699,836 + +0.4
699,836 + +0.5
699,836 + +0.3
699,836 + -2.1
700,163 + Ga0059261_0659 0.67 +0.2
700,164 - Ga0059261_0659 0.67 +1.2
700,205 + Ga0059261_0659 0.76 -1.0
700,244 + Ga0059261_0659 0.85 -0.3
700,245 - Ga0059261_0659 0.85 -1.8
700,263 - Ga0059261_0659 0.89 -0.2
700,264 + Ga0059261_0659 0.89 -0.2
700,615 + Ga0059261_0660 0.36 +0.9
700,789 + Ga0059261_0660 0.59 -0.1
700,789 + Ga0059261_0660 0.59 -0.5
700,789 + Ga0059261_0660 0.59 +0.8
700,790 - Ga0059261_0660 0.59 +0.5
700,790 - Ga0059261_0660 0.59 +1.6
700,819 + Ga0059261_0660 0.63 -1.0
700,819 + Ga0059261_0660 0.63 +0.8
700,819 + Ga0059261_0660 0.63 +1.1
700,819 + Ga0059261_0660 0.63 +0.4
700,820 - -1.1
700,820 - Ga0059261_0660 0.63 +1.6
700,820 - Ga0059261_0660 0.63 -0.6
700,820 - Ga0059261_0660 0.63 -0.7

Or see this region's nucleotide sequence