Experiment: D-Cellobiose (C); no added vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0270 and Ga0059261_0271 are separated by 85 nucleotides Ga0059261_0271 and Ga0059261_0272 are separated by 150 nucleotides Ga0059261_0272 and Ga0059261_0273 are separated by 105 nucleotides Ga0059261_0273 and Ga0059261_0274 are separated by 94 nucleotides
Ga0059261_0270: Ga0059261_0270 - Uncharacterized protein conserved in bacteria, at 258,097 to 258,561
_0270
Ga0059261_0271: Ga0059261_0271 - Uncharacterized conserved small protein containing a coiled-coil domain, at 258,647 to 258,844
_0271
Ga0059261_0272: Ga0059261_0272 - Uncharacterized small protein, at 258,995 to 259,150
_0272
Ga0059261_0273: Ga0059261_0273 - PilZ domain, at 259,256 to 259,657
_0273
Ga0059261_0274: Ga0059261_0274 - transcriptional regulator, TraR/DksA family, at 259,752 to 260,216
_0274
Position (kb) 259
260 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 258.348 kb on + strand, within Ga0059261_0270 at 258.348 kb on + strand, within Ga0059261_0270 at 258.348 kb on + strand, within Ga0059261_0270 at 258.467 kb on + strand, within Ga0059261_0270 at 258.468 kb on - strand, within Ga0059261_0270 at 258.468 kb on - strand, within Ga0059261_0270 at 258.504 kb on + strand, within Ga0059261_0270 at 258.505 kb on - strand, within Ga0059261_0270 at 258.506 kb on + strand, within Ga0059261_0270 at 258.506 kb on + strand, within Ga0059261_0270 at 258.506 kb on + strand, within Ga0059261_0270 at 258.506 kb on + strand at 258.506 kb on + strand, within Ga0059261_0270 at 258.506 kb on + strand, within Ga0059261_0270 at 258.507 kb on - strand, within Ga0059261_0270 at 258.507 kb on - strand, within Ga0059261_0270 at 258.507 kb on - strand, within Ga0059261_0270 at 258.507 kb on - strand, within Ga0059261_0270 at 258.507 kb on - strand at 258.507 kb on - strand, within Ga0059261_0270 at 258.507 kb on - strand, within Ga0059261_0270 at 258.507 kb on - strand, within Ga0059261_0270 at 258.507 kb on - strand, within Ga0059261_0270 at 258.586 kb on + strand at 258.586 kb on + strand at 258.587 kb on - strand at 258.587 kb on - strand at 258.600 kb on - strand at 258.600 kb on - strand at 258.835 kb on + strand at 258.836 kb on - strand at 258.850 kb on + strand at 258.851 kb on - strand at 258.851 kb on - strand at 258.851 kb on - strand at 258.952 kb on + strand at 258.952 kb on + strand at 258.952 kb on + strand at 258.952 kb on + strand at 258.953 kb on - strand at 258.953 kb on - strand at 258.953 kb on - strand at 258.953 kb on - strand at 258.959 kb on + strand at 258.960 kb on - strand at 258.960 kb on - strand at 258.960 kb on - strand at 259.021 kb on + strand, within Ga0059261_0272 at 259.021 kb on + strand, within Ga0059261_0272 at 259.022 kb on - strand, within Ga0059261_0272 at 259.023 kb on - strand, within Ga0059261_0272 at 259.095 kb on + strand, within Ga0059261_0272 at 259.095 kb on + strand, within Ga0059261_0272 at 259.096 kb on - strand, within Ga0059261_0272 at 259.096 kb on - strand, within Ga0059261_0272 at 259.096 kb on - strand, within Ga0059261_0272 at 259.196 kb on + strand at 259.196 kb on + strand at 259.196 kb on + strand at 259.196 kb on + strand at 259.197 kb on - strand at 259.197 kb on - strand at 259.197 kb on - strand at 259.197 kb on - strand at 259.197 kb on - strand at 259.251 kb on + strand at 259.251 kb on + strand at 259.252 kb on - strand at 259.252 kb on - strand at 259.252 kb on - strand at 259.252 kb on - strand at 259.252 kb on - strand at 259.311 kb on + strand, within Ga0059261_0273 at 259.312 kb on - strand, within Ga0059261_0273 at 259.321 kb on + strand, within Ga0059261_0273 at 259.322 kb on - strand at 259.322 kb on - strand, within Ga0059261_0273 at 259.362 kb on + strand, within Ga0059261_0273 at 259.362 kb on + strand, within Ga0059261_0273 at 259.362 kb on + strand, within Ga0059261_0273 at 259.362 kb on + strand, within Ga0059261_0273 at 259.363 kb on - strand, within Ga0059261_0273 at 259.363 kb on - strand, within Ga0059261_0273 at 259.363 kb on - strand, within Ga0059261_0273 at 259.442 kb on + strand, within Ga0059261_0273 at 259.442 kb on + strand at 259.442 kb on + strand, within Ga0059261_0273 at 259.443 kb on - strand, within Ga0059261_0273 at 259.443 kb on - strand, within Ga0059261_0273 at 259.443 kb on - strand, within Ga0059261_0273 at 259.468 kb on + strand, within Ga0059261_0273 at 259.469 kb on - strand, within Ga0059261_0273 at 259.472 kb on + strand, within Ga0059261_0273 at 259.472 kb on + strand, within Ga0059261_0273 at 259.472 kb on + strand, within Ga0059261_0273 at 259.473 kb on - strand, within Ga0059261_0273 at 259.473 kb on - strand, within Ga0059261_0273 at 259.485 kb on + strand, within Ga0059261_0273 at 259.486 kb on - strand, within Ga0059261_0273 at 259.486 kb on - strand, within Ga0059261_0273 at 259.486 kb on - strand, within Ga0059261_0273 at 259.486 kb on - strand, within Ga0059261_0273 at 259.657 kb on + strand at 259.657 kb on + strand at 259.657 kb on + strand at 259.657 kb on + strand at 259.657 kb on + strand at 259.657 kb on + strand at 259.657 kb on + strand at 259.657 kb on + strand at 259.658 kb on - strand at 259.658 kb on - strand at 259.658 kb on - strand at 259.692 kb on + strand at 259.692 kb on + strand at 259.719 kb on + strand at 259.732 kb on + strand at 259.733 kb on - strand at 259.753 kb on + strand at 259.753 kb on + strand at 259.754 kb on - strand at 259.754 kb on - strand at 259.754 kb on - strand at 259.754 kb on - strand at 259.874 kb on - strand, within Ga0059261_0274 at 259.874 kb on - strand, within Ga0059261_0274 at 259.879 kb on + strand, within Ga0059261_0274 at 259.879 kb on + strand, within Ga0059261_0274 at 259.880 kb on - strand, within Ga0059261_0274 at 260.025 kb on + strand, within Ga0059261_0274 at 260.025 kb on + strand, within Ga0059261_0274 at 260.025 kb on + strand, within Ga0059261_0274 at 260.025 kb on + strand, within Ga0059261_0274 at 260.026 kb on - strand, within Ga0059261_0274 at 260.026 kb on - strand, within Ga0059261_0274 at 260.026 kb on - strand, within Ga0059261_0274 at 260.095 kb on + strand, within Ga0059261_0274 at 260.095 kb on + strand, within Ga0059261_0274 at 260.145 kb on + strand, within Ga0059261_0274 at 260.146 kb on - strand, within Ga0059261_0274 at 260.203 kb on + strand at 260.203 kb on + strand at 260.282 kb on - strand at 260.282 kb on - strand at 260.282 kb on - strand at 260.282 kb on - strand at 260.283 kb on + strand at 260.283 kb on + strand at 260.283 kb on + strand at 260.283 kb on + strand at 260.284 kb on - strand at 260.284 kb on - strand at 260.284 kb on - strand at 260.284 kb on - strand at 260.458 kb on + strand at 260.459 kb on - strand at 260.459 kb on - strand at 260.492 kb on + strand at 260.492 kb on + strand at 260.512 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.533 kb on + strand at 260.534 kb on - strand at 260.553 kb on + strand at 260.612 kb on - strand at 260.612 kb on - strand at 260.612 kb on - strand at 260.649 kb on - strand at 260.649 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins remove 258,348 + Ga0059261_0270 0.54 -0.2 258,348 + Ga0059261_0270 0.54 +1.0 258,348 + Ga0059261_0270 0.54 +1.5 258,467 + Ga0059261_0270 0.80 +0.8 258,468 - Ga0059261_0270 0.80 +0.6 258,468 - Ga0059261_0270 0.80 -0.2 258,504 + Ga0059261_0270 0.88 +0.9 258,505 - Ga0059261_0270 0.88 -1.7 258,506 + Ga0059261_0270 0.88 +0.0 258,506 + Ga0059261_0270 0.88 -0.2 258,506 + Ga0059261_0270 0.88 -1.4 258,506 + -0.1 258,506 + Ga0059261_0270 0.88 +1.5 258,506 + Ga0059261_0270 0.88 -0.2 258,507 - Ga0059261_0270 0.88 +0.2 258,507 - Ga0059261_0270 0.88 -0.1 258,507 - Ga0059261_0270 0.88 -0.1 258,507 - Ga0059261_0270 0.88 -2.6 258,507 - +0.6 258,507 - Ga0059261_0270 0.88 +0.1 258,507 - Ga0059261_0270 0.88 -2.4 258,507 - Ga0059261_0270 0.88 -0.8 258,507 - Ga0059261_0270 0.88 -0.3 258,586 + -0.1 258,586 + +0.8 258,587 - -0.2 258,587 - -0.1 258,600 - -0.6 258,600 - +1.2 258,835 + -0.2 258,836 - -0.6 258,850 + +0.2 258,851 - +0.7 258,851 - +0.3 258,851 - -0.0 258,952 + -0.6 258,952 + +0.9 258,952 + -3.3 258,952 + -0.2 258,953 - -0.0 258,953 - +0.3 258,953 - +0.4 258,953 - +0.2 258,959 + -0.5 258,960 - -0.6 258,960 - -0.5 258,960 - +1.2 259,021 + Ga0059261_0272 0.17 +1.2 259,021 + Ga0059261_0272 0.17 -1.8 259,022 - Ga0059261_0272 0.17 -1.6 259,023 - Ga0059261_0272 0.18 -1.6 259,095 + Ga0059261_0272 0.64 +0.8 259,095 + Ga0059261_0272 0.64 +1.1 259,096 - Ga0059261_0272 0.65 +0.1 259,096 - Ga0059261_0272 0.65 +0.4 259,096 - Ga0059261_0272 0.65 -2.2 259,196 + -1.2 259,196 + -0.0 259,196 + -1.6 259,196 + -0.3 259,197 - +0.4 259,197 - +0.6 259,197 - -0.8 259,197 - +0.0 259,197 - -0.2 259,251 + +2.8 259,251 + +1.0 259,252 - -0.7 259,252 - -0.5 259,252 - -0.6 259,252 - -0.1 259,252 - +0.2 259,311 + Ga0059261_0273 0.14 +0.1 259,312 - Ga0059261_0273 0.14 -0.4 259,321 + Ga0059261_0273 0.16 -1.4 259,322 - -0.9 259,322 - Ga0059261_0273 0.16 -0.2 259,362 + Ga0059261_0273 0.26 +1.5 259,362 + Ga0059261_0273 0.26 -0.1 259,362 + Ga0059261_0273 0.26 -0.4 259,362 + Ga0059261_0273 0.26 -0.6 259,363 - Ga0059261_0273 0.27 +0.4 259,363 - Ga0059261_0273 0.27 -0.2 259,363 - Ga0059261_0273 0.27 -0.7 259,442 + Ga0059261_0273 0.46 +0.9 259,442 + +0.6 259,442 + Ga0059261_0273 0.46 -1.0 259,443 - Ga0059261_0273 0.47 +1.8 259,443 - Ga0059261_0273 0.47 -0.1 259,443 - Ga0059261_0273 0.47 +0.7 259,468 + Ga0059261_0273 0.53 -0.2 259,469 - Ga0059261_0273 0.53 +0.4 259,472 + Ga0059261_0273 0.54 -0.7 259,472 + Ga0059261_0273 0.54 -0.9 259,472 + Ga0059261_0273 0.54 -0.6 259,473 - Ga0059261_0273 0.54 -0.4 259,473 - Ga0059261_0273 0.54 -2.5 259,485 + Ga0059261_0273 0.57 -0.2 259,486 - Ga0059261_0273 0.57 +0.9 259,486 - Ga0059261_0273 0.57 +1.1 259,486 - Ga0059261_0273 0.57 +0.6 259,486 - Ga0059261_0273 0.57 -0.3 259,657 + +0.5 259,657 + -1.1 259,657 + -2.0 259,657 + +0.9 259,657 + +0.9 259,657 + -0.4 259,657 + -0.5 259,657 + -0.5 259,658 - +2.0 259,658 - -2.1 259,658 - -3.1 259,692 + -1.7 259,692 + -1.8 259,719 + -0.4 259,732 + +0.2 259,733 - +1.7 259,753 + +2.0 259,753 + +0.4 259,754 - -3.6 259,754 - -0.5 259,754 - -1.1 259,754 - +0.0 259,874 - Ga0059261_0274 0.26 -4.1 259,874 - Ga0059261_0274 0.26 -4.7 259,879 + Ga0059261_0274 0.27 -4.2 259,879 + Ga0059261_0274 0.27 -3.7 259,880 - Ga0059261_0274 0.28 -4.3 260,025 + Ga0059261_0274 0.59 -4.0 260,025 + Ga0059261_0274 0.59 -2.4 260,025 + Ga0059261_0274 0.59 -3.5 260,025 + Ga0059261_0274 0.59 -5.0 260,026 - Ga0059261_0274 0.59 -4.1 260,026 - Ga0059261_0274 0.59 -3.0 260,026 - Ga0059261_0274 0.59 -2.8 260,095 + Ga0059261_0274 0.74 -4.7 260,095 + Ga0059261_0274 0.74 -1.9 260,145 + Ga0059261_0274 0.85 -4.7 260,146 - Ga0059261_0274 0.85 -3.5 260,203 + -5.7 260,203 + -5.5 260,282 - -4.5 260,282 - -5.2 260,282 - -3.6 260,282 - -1.7 260,283 + -2.5 260,283 + -3.1 260,283 + -3.1 260,283 + -1.9 260,284 - -5.5 260,284 - -1.7 260,284 - -4.3 260,284 - -2.9 260,458 + -0.7 260,459 - +1.3 260,459 - -0.5 260,492 + -0.3 260,492 + +0.2 260,512 + -0.2 260,533 + +0.2 260,533 + +0.1 260,533 + -2.0 260,533 + +0.5 260,533 + -1.0 260,533 + -2.3 260,534 - +0.8 260,553 + -1.0 260,612 - +0.4 260,612 - -1.3 260,612 - +0.9 260,649 - +1.0 260,649 - +1.8
Or see this region's nucleotide sequence