Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12590

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS12580 and BWI76_RS12585 overlap by 4 nucleotidesBWI76_RS12585 and BWI76_RS12590 are separated by 264 nucleotidesBWI76_RS12590 and BWI76_RS12595 are separated by 99 nucleotidesBWI76_RS12595 and BWI76_RS12600 are separated by 81 nucleotides BWI76_RS12580: BWI76_RS12580 - oxidoreductase, at 2,626,711 to 2,627,430 _RS12580 BWI76_RS12585: BWI76_RS12585 - transcriptional regulator, at 2,627,427 to 2,627,861 _RS12585 BWI76_RS12590: BWI76_RS12590 - helix-turn-helix-type transcriptional regulator, at 2,628,126 to 2,628,854 _RS12590 BWI76_RS12595: BWI76_RS12595 - hypothetical protein, at 2,628,954 to 2,629,298 _RS12595 BWI76_RS12600: BWI76_RS12600 - MFS transporter, at 2,629,380 to 2,630,501 _RS12600 Position (kb) 2628 2629Strain fitness (log2 ratio) -3 -2 -1 0 1at 2627.336 kb on - strand, within BWI76_RS12580at 2627.404 kb on + strandat 2627.610 kb on + strand, within BWI76_RS12585at 2627.726 kb on + strand, within BWI76_RS12585at 2627.801 kb on + strand, within BWI76_RS12585at 2627.815 kb on + strand, within BWI76_RS12585at 2627.868 kb on + strandat 2627.868 kb on + strandat 2627.868 kb on + strandat 2628.058 kb on - strandat 2628.400 kb on - strand, within BWI76_RS12590at 2628.416 kb on - strand, within BWI76_RS12590at 2628.484 kb on - strand, within BWI76_RS12590at 2628.771 kb on - strand, within BWI76_RS12590at 2628.771 kb on - strand, within BWI76_RS12590at 2629.141 kb on - strand, within BWI76_RS12595at 2629.198 kb on + strand, within BWI76_RS12595at 2629.230 kb on - strand, within BWI76_RS12595at 2629.282 kb on - strandat 2629.372 kb on + strandat 2629.380 kb on - strandat 2629.819 kb on - strand, within BWI76_RS12600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
2,627,336 - BWI76_RS12580 0.87 +0.1
2,627,404 + +0.4
2,627,610 + BWI76_RS12585 0.42 -0.1
2,627,726 + BWI76_RS12585 0.69 +0.4
2,627,801 + BWI76_RS12585 0.86 +0.1
2,627,815 + BWI76_RS12585 0.89 +1.7
2,627,868 + -0.0
2,627,868 + +0.3
2,627,868 + -0.0
2,628,058 - +0.4
2,628,400 - BWI76_RS12590 0.38 -2.8
2,628,416 - BWI76_RS12590 0.40 -1.3
2,628,484 - BWI76_RS12590 0.49 -0.3
2,628,771 - BWI76_RS12590 0.88 -0.5
2,628,771 - BWI76_RS12590 0.88 -1.3
2,629,141 - BWI76_RS12595 0.54 +0.5
2,629,198 + BWI76_RS12595 0.71 +1.0
2,629,230 - BWI76_RS12595 0.80 +0.6
2,629,282 - +0.5
2,629,372 + -0.1
2,629,380 - -0.2
2,629,819 - BWI76_RS12600 0.39 -0.1

Or see this region's nucleotide sequence