Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08515

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08510 and BPHYT_RS08515 overlap by 4 nucleotidesBPHYT_RS08515 and BPHYT_RS08520 are separated by 324 nucleotides BPHYT_RS08510: BPHYT_RS08510 - acyl-CoA dehydrogenase, at 1,947,585 to 1,948,871 _RS08510 BPHYT_RS08515: BPHYT_RS08515 - acyl carrier protein, at 1,948,868 to 1,949,119 _RS08515 BPHYT_RS08520: BPHYT_RS08520 - GNAT family acetyltransferase, at 1,949,444 to 1,949,977 _RS08520 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -1 0 1at 1948.223 kb on + strand, within BPHYT_RS08510at 1948.534 kb on + strand, within BPHYT_RS08510at 1948.534 kb on + strand, within BPHYT_RS08510at 1948.534 kb on + strand, within BPHYT_RS08510at 1948.535 kb on - strand, within BPHYT_RS08510at 1949.132 kb on + strandat 1949.225 kb on + strandat 1949.350 kb on + strandat 1949.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,948,223 + BPHYT_RS08510 0.50 +0.2
1,948,534 + BPHYT_RS08510 0.74 +0.5
1,948,534 + BPHYT_RS08510 0.74 +0.2
1,948,534 + BPHYT_RS08510 0.74 +0.6
1,948,535 - BPHYT_RS08510 0.74 -0.5
1,949,132 + +0.4
1,949,225 + +1.4
1,949,350 + +0.8
1,949,351 - +0.4

Or see this region's nucleotide sequence