Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05015

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05010 and BPHYT_RS05015 overlap by 23 nucleotidesBPHYT_RS05015 and BPHYT_RS05020 are separated by 180 nucleotides BPHYT_RS05010: BPHYT_RS05010 - RpiR family transcriptional regulator, at 1,153,637 to 1,155,553 _RS05010 BPHYT_RS05015: BPHYT_RS05015 - 6-phosphogluconolactonase, at 1,155,531 to 1,156,235 _RS05015 BPHYT_RS05020: BPHYT_RS05020 - glucose-6-phosphate 1-dehydrogenase, at 1,156,416 to 1,157,879 _RS05020 Position (kb) 1155 1156 1157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1154.617 kb on - strand, within BPHYT_RS05010at 1154.617 kb on - strand, within BPHYT_RS05010at 1154.731 kb on - strand, within BPHYT_RS05010at 1154.731 kb on - strand, within BPHYT_RS05010at 1155.124 kb on + strand, within BPHYT_RS05010at 1155.367 kb on - strandat 1155.533 kb on - strandat 1156.290 kb on - strandat 1156.634 kb on - strand, within BPHYT_RS05020

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,154,617 - BPHYT_RS05010 0.51 -1.5
1,154,617 - BPHYT_RS05010 0.51 -4.3
1,154,731 - BPHYT_RS05010 0.57 -3.3
1,154,731 - BPHYT_RS05010 0.57 -2.5
1,155,124 + BPHYT_RS05010 0.78 -3.8
1,155,367 - -3.7
1,155,533 - -1.2
1,156,290 - -0.5
1,156,634 - BPHYT_RS05020 0.15 -3.7

Or see this region's nucleotide sequence