Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27545 and AZOBR_RS27550 are separated by 183 nucleotides AZOBR_RS27550 and AZOBR_RS27555 are separated by 20 nucleotides AZOBR_RS27555 and AZOBR_RS27560 are separated by 482 nucleotides AZOBR_RS27560 and AZOBR_RS27565 are separated by 14 nucleotides
AZOBR_RS27545: AZOBR_RS27545 - short-chain dehydrogenase, at 342,940 to 343,728
_RS27545
AZOBR_RS27550: AZOBR_RS27550 - transcriptional regulator, at 343,912 to 344,268
_RS27550
AZOBR_RS27555: AZOBR_RS27555 - hypothetical protein, at 344,289 to 344,822
_RS27555
AZOBR_RS27560: AZOBR_RS27560 - hypothetical protein, at 345,305 to 345,634
_RS27560
AZOBR_RS27565: AZOBR_RS27565 - GntR family transcriptional regulator, at 345,649 to 347,049
_RS27565
Position (kb) 344
345 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.391 kb on - strand, within AZOBR_RS27545 at 343.816 kb on + strand at 343.816 kb on + strand at 343.817 kb on - strand at 343.817 kb on - strand at 343.820 kb on - strand at 343.858 kb on + strand at 343.858 kb on + strand at 343.859 kb on - strand at 343.872 kb on + strand at 343.873 kb on - strand at 343.873 kb on - strand at 343.886 kb on - strand at 344.120 kb on - strand, within AZOBR_RS27550 at 344.266 kb on + strand at 344.266 kb on + strand at 344.392 kb on + strand, within AZOBR_RS27555 at 344.485 kb on + strand, within AZOBR_RS27555 at 344.485 kb on + strand, within AZOBR_RS27555 at 344.486 kb on - strand, within AZOBR_RS27555 at 344.533 kb on + strand, within AZOBR_RS27555 at 344.533 kb on + strand, within AZOBR_RS27555 at 344.533 kb on + strand, within AZOBR_RS27555 at 344.534 kb on - strand, within AZOBR_RS27555 at 344.534 kb on - strand, within AZOBR_RS27555 at 344.534 kb on - strand, within AZOBR_RS27555 at 344.534 kb on - strand, within AZOBR_RS27555 at 344.542 kb on + strand, within AZOBR_RS27555 at 344.629 kb on + strand, within AZOBR_RS27555 at 344.630 kb on - strand, within AZOBR_RS27555 at 344.630 kb on - strand, within AZOBR_RS27555 at 344.630 kb on - strand, within AZOBR_RS27555 at 344.630 kb on - strand, within AZOBR_RS27555 at 344.822 kb on + strand at 344.823 kb on - strand at 344.823 kb on - strand at 345.025 kb on + strand at 345.026 kb on + strand at 345.026 kb on - strand at 345.026 kb on - strand at 345.026 kb on - strand at 345.102 kb on + strand at 345.103 kb on - strand at 345.103 kb on - strand at 345.103 kb on - strand at 345.103 kb on - strand at 345.103 kb on - strand at 345.805 kb on + strand, within AZOBR_RS27565 at 345.805 kb on + strand, within AZOBR_RS27565 at 345.806 kb on - strand, within AZOBR_RS27565
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB remove 343,391 - AZOBR_RS27545 0.57 +0.8 343,816 + +0.3 343,816 + -0.2 343,817 - +0.5 343,817 - -2.5 343,820 - +1.6 343,858 + +0.1 343,858 + -0.3 343,859 - +0.5 343,872 + -2.4 343,873 - +0.1 343,873 - -0.3 343,886 - +2.0 344,120 - AZOBR_RS27550 0.58 +1.1 344,266 + +0.4 344,266 + -1.1 344,392 + AZOBR_RS27555 0.19 +0.4 344,485 + AZOBR_RS27555 0.37 +0.2 344,485 + AZOBR_RS27555 0.37 +0.4 344,486 - AZOBR_RS27555 0.37 -0.2 344,533 + AZOBR_RS27555 0.46 -2.0 344,533 + AZOBR_RS27555 0.46 -0.2 344,533 + AZOBR_RS27555 0.46 +2.1 344,534 - AZOBR_RS27555 0.46 -0.1 344,534 - AZOBR_RS27555 0.46 +0.6 344,534 - AZOBR_RS27555 0.46 +0.2 344,534 - AZOBR_RS27555 0.46 +0.5 344,542 + AZOBR_RS27555 0.47 +0.8 344,629 + AZOBR_RS27555 0.64 +0.5 344,630 - AZOBR_RS27555 0.64 -0.1 344,630 - AZOBR_RS27555 0.64 +0.2 344,630 - AZOBR_RS27555 0.64 +2.4 344,630 - AZOBR_RS27555 0.64 +0.4 344,822 + -0.6 344,823 - +1.0 344,823 - +0.0 345,025 + +1.3 345,026 + +0.9 345,026 - -2.3 345,026 - +1.6 345,026 - -1.1 345,102 + -1.7 345,103 - +0.6 345,103 - +1.7 345,103 - -0.3 345,103 - -1.1 345,103 - -0.2 345,805 + AZOBR_RS27565 0.11 +1.0 345,805 + AZOBR_RS27565 0.11 -1.9 345,806 - AZOBR_RS27565 0.11 +0.1
Or see this region's nucleotide sequence