Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26620

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26610 and AZOBR_RS26615 are separated by 20 nucleotidesAZOBR_RS26615 and AZOBR_RS26620 are separated by 244 nucleotidesAZOBR_RS26620 and AZOBR_RS26625 are separated by 119 nucleotides AZOBR_RS26610: AZOBR_RS26610 - iron dicitrate transport regulator FecR, at 115,231 to 116,274 _RS26610 AZOBR_RS26615: AZOBR_RS26615 - RNA polymerase, at 116,295 to 116,888 _RS26615 AZOBR_RS26620: AZOBR_RS26620 - putative transcriptional regulator GntR family, at 117,133 to 117,807 _RS26620 AZOBR_RS26625: AZOBR_RS26625 - dehydroascorbate transporter, at 117,927 to 119,210 _RS26625 Position (kb) 117 118Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 116.313 kb on + strandat 116.313 kb on + strandat 116.313 kb on + strandat 116.314 kb on - strandat 116.314 kb on - strandat 116.314 kb on - strandat 116.764 kb on + strand, within AZOBR_RS26615at 116.765 kb on - strand, within AZOBR_RS26615at 116.765 kb on - strand, within AZOBR_RS26615at 116.765 kb on - strand, within AZOBR_RS26615at 117.134 kb on + strandat 117.458 kb on + strand, within AZOBR_RS26620at 117.458 kb on + strand, within AZOBR_RS26620at 117.458 kb on + strand, within AZOBR_RS26620at 117.459 kb on - strand, within AZOBR_RS26620at 117.605 kb on + strand, within AZOBR_RS26620at 117.686 kb on + strand, within AZOBR_RS26620at 117.867 kb on + strandat 117.867 kb on + strandat 118.144 kb on + strand, within AZOBR_RS26625at 118.417 kb on + strand, within AZOBR_RS26625at 118.472 kb on - strand, within AZOBR_RS26625at 118.472 kb on - strand, within AZOBR_RS26625at 118.735 kb on + strand, within AZOBR_RS26625at 118.736 kb on - strand, within AZOBR_RS26625

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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116,313 + -1.7
116,313 + +0.5
116,313 + -1.3
116,314 - -1.3
116,314 - -1.8
116,314 - -1.2
116,764 + AZOBR_RS26615 0.79 +0.3
116,765 - AZOBR_RS26615 0.79 -1.7
116,765 - AZOBR_RS26615 0.79 -1.9
116,765 - AZOBR_RS26615 0.79 -0.1
117,134 + -1.0
117,458 + AZOBR_RS26620 0.48 +1.3
117,458 + AZOBR_RS26620 0.48 -2.2
117,458 + AZOBR_RS26620 0.48 -1.3
117,459 - AZOBR_RS26620 0.48 +0.5
117,605 + AZOBR_RS26620 0.70 -0.8
117,686 + AZOBR_RS26620 0.82 -0.2
117,867 + +0.4
117,867 + +0.5
118,144 + AZOBR_RS26625 0.17 -0.4
118,417 + AZOBR_RS26625 0.38 +0.7
118,472 - AZOBR_RS26625 0.42 -0.2
118,472 - AZOBR_RS26625 0.42 +5.1
118,735 + AZOBR_RS26625 0.63 -0.8
118,736 - AZOBR_RS26625 0.63 +2.3

Or see this region's nucleotide sequence