Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22495 and AZOBR_RS22500 are separated by 293 nucleotides AZOBR_RS22500 and AZOBR_RS22505 are separated by 14 nucleotides
AZOBR_RS22495: AZOBR_RS22495 - GntR family transcriptional regulator, at 57,746 to 58,432
_RS22495
AZOBR_RS22500: AZOBR_RS22500 - methylmalonate-semialdehyde dehydrogenase, at 58,726 to 60,225
_RS22500
AZOBR_RS22505: AZOBR_RS22505 - omega amino acid--pyruvate aminotransferase, at 60,240 to 61,550
_RS22505
Position (kb) 58
59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 57.810 kb on - strand at 57.810 kb on - strand at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.848 kb on + strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.849 kb on - strand, within AZOBR_RS22495 at 57.961 kb on - strand, within AZOBR_RS22495 at 57.986 kb on + strand, within AZOBR_RS22495 at 57.987 kb on - strand, within AZOBR_RS22495 at 58.151 kb on - strand, within AZOBR_RS22495 at 58.161 kb on - strand, within AZOBR_RS22495 at 58.502 kb on + strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.503 kb on - strand at 58.503 kb on - strand at 58.527 kb on + strand at 58.528 kb on - strand at 58.687 kb on - strand at 58.687 kb on - strand at 58.811 kb on + strand at 58.812 kb on - strand at 58.887 kb on - strand, within AZOBR_RS22500 at 59.001 kb on - strand, within AZOBR_RS22500 at 59.088 kb on - strand, within AZOBR_RS22500 at 59.526 kb on - strand, within AZOBR_RS22500 at 59.526 kb on - strand, within AZOBR_RS22500 at 59.531 kb on + strand, within AZOBR_RS22500 at 59.532 kb on - strand, within AZOBR_RS22500 at 59.895 kb on - strand, within AZOBR_RS22500 at 60.353 kb on - strand at 60.448 kb on + strand, within AZOBR_RS22505 at 60.448 kb on + strand, within AZOBR_RS22505 at 60.449 kb on - strand, within AZOBR_RS22505 at 60.449 kb on - strand, within AZOBR_RS22505 at 60.449 kb on - strand, within AZOBR_RS22505 at 60.464 kb on + strand, within AZOBR_RS22505 at 60.465 kb on - strand, within AZOBR_RS22505 at 60.604 kb on + strand, within AZOBR_RS22505 at 60.605 kb on - strand, within AZOBR_RS22505 at 60.605 kb on - strand, within AZOBR_RS22505 at 60.611 kb on - strand, within AZOBR_RS22505 at 60.634 kb on + strand, within AZOBR_RS22505 at 60.634 kb on + strand, within AZOBR_RS22505 at 60.634 kb on + strand, within AZOBR_RS22505 at 60.634 kb on + strand, within AZOBR_RS22505 at 60.635 kb on - strand, within AZOBR_RS22505 at 60.635 kb on - strand, within AZOBR_RS22505 at 60.635 kb on - strand, within AZOBR_RS22505 at 60.635 kb on - strand, within AZOBR_RS22505 at 60.667 kb on + strand, within AZOBR_RS22505 at 60.668 kb on - strand, within AZOBR_RS22505 at 61.183 kb on + strand, within AZOBR_RS22505
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB remove 57,810 - -2.2 57,810 - +0.2 57,848 + AZOBR_RS22495 0.15 -0.9 57,848 + AZOBR_RS22495 0.15 +2.5 57,848 + AZOBR_RS22495 0.15 -0.2 57,848 + AZOBR_RS22495 0.15 -1.7 57,848 + AZOBR_RS22495 0.15 +0.5 57,848 + AZOBR_RS22495 0.15 -0.2 57,848 + AZOBR_RS22495 0.15 -0.1 57,848 + AZOBR_RS22495 0.15 -0.2 57,848 + AZOBR_RS22495 0.15 +0.3 57,849 - AZOBR_RS22495 0.15 -0.6 57,849 - AZOBR_RS22495 0.15 -0.4 57,849 - AZOBR_RS22495 0.15 -1.3 57,849 - AZOBR_RS22495 0.15 -0.8 57,849 - AZOBR_RS22495 0.15 +2.1 57,849 - AZOBR_RS22495 0.15 -0.6 57,961 - AZOBR_RS22495 0.31 -0.0 57,986 + AZOBR_RS22495 0.35 +3.2 57,987 - AZOBR_RS22495 0.35 +0.9 58,151 - AZOBR_RS22495 0.59 +1.0 58,161 - AZOBR_RS22495 0.60 -0.3 58,502 + -0.9 58,502 + -0.4 58,502 + +0.1 58,502 + +0.1 58,502 + +0.8 58,502 + +1.9 58,503 - -0.8 58,503 - -0.6 58,527 + -0.1 58,528 - +0.9 58,687 - -0.6 58,687 - -0.2 58,811 + +0.5 58,812 - -0.9 58,887 - AZOBR_RS22500 0.11 +0.0 59,001 - AZOBR_RS22500 0.18 -1.1 59,088 - AZOBR_RS22500 0.24 +0.0 59,526 - AZOBR_RS22500 0.53 -0.0 59,526 - AZOBR_RS22500 0.53 -1.5 59,531 + AZOBR_RS22500 0.54 +0.2 59,532 - AZOBR_RS22500 0.54 +0.5 59,895 - AZOBR_RS22500 0.78 +0.2 60,353 - -0.5 60,448 + AZOBR_RS22505 0.16 -2.3 60,448 + AZOBR_RS22505 0.16 +0.0 60,449 - AZOBR_RS22505 0.16 -0.1 60,449 - AZOBR_RS22505 0.16 +0.8 60,449 - AZOBR_RS22505 0.16 +3.2 60,464 + AZOBR_RS22505 0.17 -0.6 60,465 - AZOBR_RS22505 0.17 -0.2 60,604 + AZOBR_RS22505 0.28 -0.9 60,605 - AZOBR_RS22505 0.28 +0.1 60,605 - AZOBR_RS22505 0.28 +0.1 60,611 - AZOBR_RS22505 0.28 -2.8 60,634 + AZOBR_RS22505 0.30 -0.9 60,634 + AZOBR_RS22505 0.30 +0.2 60,634 + AZOBR_RS22505 0.30 -0.1 60,634 + AZOBR_RS22505 0.30 -0.5 60,635 - AZOBR_RS22505 0.30 -0.4 60,635 - AZOBR_RS22505 0.30 -1.2 60,635 - AZOBR_RS22505 0.30 -1.0 60,635 - AZOBR_RS22505 0.30 +1.1 60,667 + AZOBR_RS22505 0.33 -0.5 60,668 - AZOBR_RS22505 0.33 +0.7 61,183 + AZOBR_RS22505 0.72 -0.4
Or see this region's nucleotide sequence