Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14870

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14865 and AZOBR_RS14870 are separated by 85 nucleotidesAZOBR_RS14870 and AZOBR_RS14875 are separated by 129 nucleotidesAZOBR_RS14875 and AZOBR_RS14880 are separated by 100 nucleotides AZOBR_RS14865: AZOBR_RS14865 - aminopeptidase N, at 107,728 to 110,385 _RS14865 AZOBR_RS14870: AZOBR_RS14870 - cytochrome C transmembrane protein, at 110,471 to 110,851 _RS14870 AZOBR_RS14875: AZOBR_RS14875 - carbon monoxide dehydrogenase subunit G, at 110,981 to 111,643 _RS14875 AZOBR_RS14880: AZOBR_RS14880 - hypothetical protein, at 111,744 to 112,205 _RS14880 Position (kb) 110 111Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 109.631 kb on - strand, within AZOBR_RS14865at 109.874 kb on - strand, within AZOBR_RS14865at 109.874 kb on - strand, within AZOBR_RS14865at 109.969 kb on + strand, within AZOBR_RS14865at 109.969 kb on + strand, within AZOBR_RS14865at 110.111 kb on - strand, within AZOBR_RS14865at 110.111 kb on - strand, within AZOBR_RS14865at 110.580 kb on + strand, within AZOBR_RS14870at 110.580 kb on + strand, within AZOBR_RS14870at 110.581 kb on - strand, within AZOBR_RS14870at 110.840 kb on - strandat 110.840 kb on - strandat 110.840 kb on - strandat 110.914 kb on + strandat 110.914 kb on + strandat 110.914 kb on + strandat 110.914 kb on + strandat 110.915 kb on - strandat 110.915 kb on - strandat 110.915 kb on - strandat 110.929 kb on + strandat 110.930 kb on - strandat 111.045 kb on + strandat 111.045 kb on + strandat 111.046 kb on - strandat 111.046 kb on - strandat 111.423 kb on + strand, within AZOBR_RS14875at 111.423 kb on + strand, within AZOBR_RS14875at 111.424 kb on - strand, within AZOBR_RS14875at 111.424 kb on - strand, within AZOBR_RS14875at 111.680 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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109,631 - AZOBR_RS14865 0.72 -3.0
109,874 - AZOBR_RS14865 0.81 -0.7
109,874 - AZOBR_RS14865 0.81 -0.9
109,969 + AZOBR_RS14865 0.84 -0.4
109,969 + AZOBR_RS14865 0.84 -1.8
110,111 - AZOBR_RS14865 0.90 -0.2
110,111 - AZOBR_RS14865 0.90 -0.0
110,580 + AZOBR_RS14870 0.29 -0.0
110,580 + AZOBR_RS14870 0.29 -1.2
110,581 - AZOBR_RS14870 0.29 +0.7
110,840 - +2.6
110,840 - -0.7
110,840 - -0.2
110,914 + +1.0
110,914 + +0.2
110,914 + -0.8
110,914 + +0.2
110,915 - +0.8
110,915 - -0.4
110,915 - -0.4
110,929 + +0.3
110,930 - +0.9
111,045 + +0.2
111,045 + +0.2
111,046 - +1.1
111,046 - -1.3
111,423 + AZOBR_RS14875 0.67 +0.5
111,423 + AZOBR_RS14875 0.67 +0.1
111,424 - AZOBR_RS14875 0.67 +0.9
111,424 - AZOBR_RS14875 0.67 +0.2
111,680 + +1.0

Or see this region's nucleotide sequence