Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10705

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10705 and AZOBR_RS10710 are separated by 137 nucleotides AZOBR_RS10705: AZOBR_RS10705 - hypothetical protein, at 2,248,628 to 2,249,764 _RS10705 AZOBR_RS10710: AZOBR_RS10710 - radical SAM domain-containing protein, at 2,249,902 to 2,250,918 _RS10710 Position (kb) 2248 2249 2250Strain fitness (log2 ratio) -2 -1 0 1 2at 2248.603 kb on + strandat 2248.604 kb on - strandat 2248.689 kb on + strandat 2248.689 kb on + strandat 2248.690 kb on - strandat 2248.690 kb on - strandat 2248.690 kb on - strandat 2248.690 kb on - strandat 2248.690 kb on - strandat 2248.692 kb on + strandat 2248.692 kb on + strandat 2248.693 kb on - strandat 2248.857 kb on + strand, within AZOBR_RS10705at 2248.899 kb on + strand, within AZOBR_RS10705at 2249.133 kb on + strand, within AZOBR_RS10705at 2249.134 kb on - strand, within AZOBR_RS10705at 2249.157 kb on + strand, within AZOBR_RS10705at 2249.158 kb on - strand, within AZOBR_RS10705at 2249.158 kb on - strand, within AZOBR_RS10705at 2249.734 kb on - strandat 2249.842 kb on + strandat 2249.843 kb on - strandat 2249.843 kb on - strandat 2249.864 kb on + strandat 2249.864 kb on + strandat 2249.864 kb on + strandat 2249.864 kb on + strandat 2249.864 kb on + strandat 2249.865 kb on - strandat 2249.865 kb on - strandat 2250.184 kb on + strand, within AZOBR_RS10710at 2250.184 kb on + strand, within AZOBR_RS10710at 2250.184 kb on + strand, within AZOBR_RS10710at 2250.184 kb on + strand, within AZOBR_RS10710at 2250.185 kb on - strand, within AZOBR_RS10710at 2250.356 kb on - strand, within AZOBR_RS10710at 2250.376 kb on + strand, within AZOBR_RS10710at 2250.376 kb on + strand, within AZOBR_RS10710at 2250.376 kb on + strand, within AZOBR_RS10710at 2250.376 kb on + strand, within AZOBR_RS10710at 2250.377 kb on - strand, within AZOBR_RS10710at 2250.377 kb on - strand, within AZOBR_RS10710at 2250.434 kb on - strand, within AZOBR_RS10710at 2250.434 kb on - strand, within AZOBR_RS10710

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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2,248,603 + -0.3
2,248,604 - -0.0
2,248,689 + -0.9
2,248,689 + -1.3
2,248,690 - +1.7
2,248,690 - -1.8
2,248,690 - -0.8
2,248,690 - -0.0
2,248,690 - +0.3
2,248,692 + -2.2
2,248,692 + -0.5
2,248,693 - +1.4
2,248,857 + AZOBR_RS10705 0.20 +0.9
2,248,899 + AZOBR_RS10705 0.24 -0.7
2,249,133 + AZOBR_RS10705 0.44 +1.7
2,249,134 - AZOBR_RS10705 0.45 -0.6
2,249,157 + AZOBR_RS10705 0.47 -0.4
2,249,158 - AZOBR_RS10705 0.47 -1.4
2,249,158 - AZOBR_RS10705 0.47 -1.9
2,249,734 - +1.0
2,249,842 + +1.0
2,249,843 - +0.0
2,249,843 - +0.8
2,249,864 + +0.1
2,249,864 + -0.6
2,249,864 + -0.2
2,249,864 + -0.5
2,249,864 + -1.5
2,249,865 - +0.7
2,249,865 - -0.4
2,250,184 + AZOBR_RS10710 0.28 +0.1
2,250,184 + AZOBR_RS10710 0.28 -0.1
2,250,184 + AZOBR_RS10710 0.28 -0.4
2,250,184 + AZOBR_RS10710 0.28 -2.2
2,250,185 - AZOBR_RS10710 0.28 -0.3
2,250,356 - AZOBR_RS10710 0.45 +2.2
2,250,376 + AZOBR_RS10710 0.47 -0.2
2,250,376 + AZOBR_RS10710 0.47 -0.2
2,250,376 + AZOBR_RS10710 0.47 +1.2
2,250,376 + AZOBR_RS10710 0.47 +1.4
2,250,377 - AZOBR_RS10710 0.47 -1.3
2,250,377 - AZOBR_RS10710 0.47 -1.4
2,250,434 - AZOBR_RS10710 0.52 +0.3
2,250,434 - AZOBR_RS10710 0.52 -0.3

Or see this region's nucleotide sequence