Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03215

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03210 and AZOBR_RS03215 are separated by 136 nucleotidesAZOBR_RS03215 and AZOBR_RS03220 are separated by 113 nucleotides AZOBR_RS03210: AZOBR_RS03210 - hypothetical protein, at 682,141 to 682,755 _RS03210 AZOBR_RS03215: AZOBR_RS03215 - hypothetical protein, at 682,892 to 683,377 _RS03215 AZOBR_RS03220: AZOBR_RS03220 - 3-dehydroquinate synthase, at 683,491 to 684,627 _RS03220 Position (kb) 682 683 684Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 682.050 kb on + strandat 682.063 kb on + strandat 682.063 kb on + strandat 682.063 kb on + strandat 682.063 kb on + strandat 682.064 kb on - strandat 682.064 kb on - strandat 682.064 kb on - strandat 682.079 kb on - strandat 682.175 kb on + strandat 682.340 kb on + strand, within AZOBR_RS03210at 682.341 kb on - strand, within AZOBR_RS03210at 682.634 kb on + strand, within AZOBR_RS03210at 682.634 kb on + strand, within AZOBR_RS03210at 682.634 kb on + strand, within AZOBR_RS03210at 682.634 kb on + strand, within AZOBR_RS03210at 682.635 kb on - strand, within AZOBR_RS03210at 682.635 kb on - strand, within AZOBR_RS03210at 682.778 kb on - strandat 683.091 kb on + strand, within AZOBR_RS03215at 683.477 kb on + strandat 683.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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682,050 + -0.7
682,063 + +1.1
682,063 + +0.2
682,063 + -2.3
682,063 + -0.2
682,064 - +0.3
682,064 - +0.1
682,064 - -1.8
682,079 - -0.7
682,175 + +1.8
682,340 + AZOBR_RS03210 0.32 -0.8
682,341 - AZOBR_RS03210 0.33 -2.1
682,634 + AZOBR_RS03210 0.80 -0.4
682,634 + AZOBR_RS03210 0.80 -0.2
682,634 + AZOBR_RS03210 0.80 -0.2
682,634 + AZOBR_RS03210 0.80 -2.8
682,635 - AZOBR_RS03210 0.80 -0.8
682,635 - AZOBR_RS03210 0.80 +0.4
682,778 - -0.4
683,091 + AZOBR_RS03215 0.41 -0.4
683,477 + +0.6
683,478 - +0.8

Or see this region's nucleotide sequence