Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18170

Experiment: Inosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_18165 and AO356_18170 are separated by 238 nucleotidesAO356_18170 and AO356_18175 are separated by 10 nucleotidesAO356_18175 and AO356_18180 are separated by 467 nucleotides AO356_18165: AO356_18165 - serine dehydratase, at 4,092,480 to 4,093,856 _18165 AO356_18170: AO356_18170 - glycine dehydrogenase, at 4,094,095 to 4,096,944 _18170 AO356_18175: AO356_18175 - glycine cleavage system protein H, at 4,096,955 to 4,097,338 _18175 AO356_18180: AO356_18180 - Fis family transcriptional regulator, at 4,097,806 to 4,099,314 _18180 Position (kb) 4094 4095 4096 4097Strain fitness (log2 ratio) -2 -1 0 1 2at 4093.297 kb on + strand, within AO356_18165at 4093.297 kb on + strand, within AO356_18165at 4093.298 kb on - strand, within AO356_18165at 4093.298 kb on - strand, within AO356_18165at 4093.298 kb on - strand, within AO356_18165at 4093.298 kb on - strand, within AO356_18165at 4093.298 kb on - strand, within AO356_18165at 4093.423 kb on + strand, within AO356_18165at 4093.423 kb on + strand, within AO356_18165at 4093.423 kb on + strand, within AO356_18165at 4093.424 kb on - strand, within AO356_18165at 4093.424 kb on - strand, within AO356_18165at 4093.426 kb on + strand, within AO356_18165at 4093.426 kb on + strand, within AO356_18165at 4093.426 kb on + strand, within AO356_18165at 4093.705 kb on + strand, within AO356_18165at 4093.878 kb on + strandat 4093.878 kb on + strandat 4093.879 kb on - strandat 4093.879 kb on - strandat 4094.091 kb on + strandat 4094.091 kb on + strandat 4094.091 kb on + strandat 4094.091 kb on + strandat 4094.091 kb on + strandat 4094.092 kb on - strandat 4094.102 kb on + strandat 4094.102 kb on + strandat 4094.102 kb on + strandat 4094.102 kb on + strandat 4094.102 kb on + strandat 4094.102 kb on + strandat 4094.102 kb on + strandat 4094.103 kb on - strandat 4094.103 kb on - strandat 4094.103 kb on - strandat 4094.103 kb on - strandat 4094.180 kb on + strandat 4094.180 kb on + strandat 4094.181 kb on - strandat 4094.181 kb on - strandat 4094.181 kb on - strandat 4094.232 kb on - strandat 4094.232 kb on - strandat 4094.576 kb on + strand, within AO356_18170at 4094.603 kb on + strand, within AO356_18170at 4094.603 kb on + strand, within AO356_18170at 4094.603 kb on + strand, within AO356_18170at 4094.603 kb on + strand, within AO356_18170at 4094.603 kb on + strand, within AO356_18170at 4094.603 kb on + strand, within AO356_18170at 4094.603 kb on + strand, within AO356_18170at 4094.604 kb on - strand, within AO356_18170at 4094.604 kb on - strand, within AO356_18170at 4094.604 kb on - strand, within AO356_18170at 4094.604 kb on - strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.669 kb on + strand, within AO356_18170at 4094.670 kb on - strand, within AO356_18170at 4094.670 kb on - strand, within AO356_18170at 4094.670 kb on - strand, within AO356_18170at 4094.670 kb on - strand, within AO356_18170at 4094.924 kb on + strand, within AO356_18170at 4094.924 kb on + strand, within AO356_18170at 4094.924 kb on + strand, within AO356_18170at 4094.924 kb on + strand, within AO356_18170at 4094.924 kb on + strand, within AO356_18170at 4094.924 kb on + strand, within AO356_18170at 4094.925 kb on - strand, within AO356_18170at 4094.925 kb on - strand, within AO356_18170at 4094.925 kb on - strand, within AO356_18170at 4094.984 kb on - strand, within AO356_18170at 4094.984 kb on - strand, within AO356_18170at 4094.984 kb on - strand, within AO356_18170at 4095.002 kb on + strand, within AO356_18170at 4095.003 kb on - strand, within AO356_18170at 4095.003 kb on - strand, within AO356_18170at 4095.203 kb on + strand, within AO356_18170at 4095.230 kb on + strand, within AO356_18170at 4095.276 kb on - strand, within AO356_18170at 4095.902 kb on + strand, within AO356_18170at 4095.911 kb on + strand, within AO356_18170at 4095.911 kb on + strand, within AO356_18170at 4095.911 kb on + strand, within AO356_18170at 4095.911 kb on + strand, within AO356_18170at 4095.911 kb on + strand, within AO356_18170at 4095.912 kb on - strand, within AO356_18170at 4095.912 kb on - strand, within AO356_18170at 4095.912 kb on - strand, within AO356_18170at 4096.097 kb on + strand, within AO356_18170at 4096.097 kb on + strand, within AO356_18170at 4096.098 kb on - strand, within AO356_18170at 4096.098 kb on - strand, within AO356_18170at 4096.098 kb on - strand, within AO356_18170at 4096.098 kb on - strand, within AO356_18170at 4096.098 kb on - strand, within AO356_18170at 4096.098 kb on - strand, within AO356_18170at 4096.393 kb on + strand, within AO356_18170at 4096.393 kb on + strand, within AO356_18170at 4096.393 kb on + strand, within AO356_18170at 4096.611 kb on - strand, within AO356_18170at 4096.611 kb on - strand, within AO356_18170at 4096.619 kb on + strand, within AO356_18170at 4096.620 kb on - strand, within AO356_18170at 4096.620 kb on - strand, within AO356_18170at 4096.620 kb on - strand, within AO356_18170at 4096.620 kb on - strand, within AO356_18170at 4096.628 kb on + strand, within AO356_18170at 4096.629 kb on - strand, within AO356_18170at 4096.685 kb on + strandat 4096.685 kb on + strandat 4096.685 kb on + strandat 4096.685 kb on + strandat 4096.685 kb on + strandat 4096.685 kb on + strandat 4096.685 kb on + strandat 4096.685 kb on + strandat 4096.685 kb on + strandat 4096.685 kb on + strandat 4096.686 kb on - strandat 4096.686 kb on - strandat 4096.686 kb on - strandat 4096.686 kb on - strandat 4096.686 kb on - strandat 4096.686 kb on - strandat 4096.688 kb on + strandat 4096.688 kb on + strandat 4096.703 kb on + strandat 4096.703 kb on + strandat 4096.703 kb on + strandat 4096.703 kb on + strandat 4096.703 kb on + strandat 4096.704 kb on - strandat 4096.704 kb on - strandat 4096.704 kb on - strandat 4096.704 kb on - strandat 4096.704 kb on - strandat 4096.989 kb on + strandat 4096.989 kb on + strandat 4096.989 kb on + strandat 4096.990 kb on - strandat 4097.011 kb on + strand, within AO356_18175at 4097.038 kb on + strand, within AO356_18175at 4097.039 kb on - strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.142 kb on + strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.143 kb on - strand, within AO356_18175at 4097.199 kb on + strand, within AO356_18175at 4097.199 kb on + strand, within AO356_18175at 4097.199 kb on + strand, within AO356_18175at 4097.270 kb on + strand, within AO356_18175at 4097.270 kb on + strand, within AO356_18175at 4097.271 kb on - strand, within AO356_18175at 4097.410 kb on - strandat 4097.410 kb on - strandat 4097.410 kb on - strandat 4097.410 kb on - strandat 4097.410 kb on - strandat 4097.411 kb on + strandat 4097.411 kb on + strandat 4097.439 kb on - strandat 4097.441 kb on + strandat 4097.454 kb on - strandat 4097.454 kb on - strandat 4097.612 kb on + strandat 4097.900 kb on + strandat 4097.901 kb on - strandat 4097.901 kb on - strandat 4097.910 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
remove
4,093,297 + AO356_18165 0.59 +0.5
4,093,297 + AO356_18165 0.59 -0.0
4,093,298 - AO356_18165 0.59 -0.6
4,093,298 - AO356_18165 0.59 +0.5
4,093,298 - AO356_18165 0.59 +0.2
4,093,298 - AO356_18165 0.59 -1.3
4,093,298 - AO356_18165 0.59 +0.4
4,093,423 + AO356_18165 0.68 -0.4
4,093,423 + AO356_18165 0.68 +0.6
4,093,423 + AO356_18165 0.68 +0.2
4,093,424 - AO356_18165 0.69 -0.2
4,093,424 - AO356_18165 0.69 -0.2
4,093,426 + AO356_18165 0.69 -0.8
4,093,426 + AO356_18165 0.69 -0.2
4,093,426 + AO356_18165 0.69 -1.1
4,093,705 + AO356_18165 0.89 +0.8
4,093,878 + -0.4
4,093,878 + -1.8
4,093,879 - +0.1
4,093,879 - +0.2
4,094,091 + -0.3
4,094,091 + -0.5
4,094,091 + -0.3
4,094,091 + -0.5
4,094,091 + +0.6
4,094,092 - -1.4
4,094,102 + -0.1
4,094,102 + +0.2
4,094,102 + +1.0
4,094,102 + +0.6
4,094,102 + +0.3
4,094,102 + -0.2
4,094,102 + +0.4
4,094,103 - -1.0
4,094,103 - -0.7
4,094,103 - -0.3
4,094,103 - -0.0
4,094,180 + -0.3
4,094,180 + +0.9
4,094,181 - +0.1
4,094,181 - -0.2
4,094,181 - -1.3
4,094,232 - -1.6
4,094,232 - -0.8
4,094,576 + AO356_18170 0.17 +0.7
4,094,603 + AO356_18170 0.18 +0.9
4,094,603 + AO356_18170 0.18 -0.4
4,094,603 + AO356_18170 0.18 -0.3
4,094,603 + AO356_18170 0.18 -0.1
4,094,603 + AO356_18170 0.18 +1.8
4,094,603 + AO356_18170 0.18 +0.2
4,094,603 + AO356_18170 0.18 -0.2
4,094,604 - AO356_18170 0.18 +0.6
4,094,604 - AO356_18170 0.18 -0.3
4,094,604 - AO356_18170 0.18 +1.3
4,094,604 - AO356_18170 0.18 -1.4
4,094,669 + AO356_18170 0.20 -0.2
4,094,669 + AO356_18170 0.20 +0.2
4,094,669 + AO356_18170 0.20 +0.3
4,094,669 + AO356_18170 0.20 +0.6
4,094,669 + AO356_18170 0.20 +0.2
4,094,669 + AO356_18170 0.20 +0.4
4,094,669 + AO356_18170 0.20 +0.4
4,094,669 + AO356_18170 0.20 -0.5
4,094,669 + AO356_18170 0.20 -0.9
4,094,669 + AO356_18170 0.20 -0.1
4,094,669 + AO356_18170 0.20 +0.6
4,094,669 + AO356_18170 0.20 -0.1
4,094,670 - AO356_18170 0.20 -0.7
4,094,670 - AO356_18170 0.20 +0.2
4,094,670 - AO356_18170 0.20 -0.6
4,094,670 - AO356_18170 0.20 -1.8
4,094,924 + AO356_18170 0.29 -0.2
4,094,924 + AO356_18170 0.29 -1.5
4,094,924 + AO356_18170 0.29 +0.2
4,094,924 + AO356_18170 0.29 -0.1
4,094,924 + AO356_18170 0.29 -0.2
4,094,924 + AO356_18170 0.29 +1.5
4,094,925 - AO356_18170 0.29 +0.3
4,094,925 - AO356_18170 0.29 -0.1
4,094,925 - AO356_18170 0.29 +0.2
4,094,984 - AO356_18170 0.31 -0.5
4,094,984 - AO356_18170 0.31 +0.6
4,094,984 - AO356_18170 0.31 -0.2
4,095,002 + AO356_18170 0.32 -0.8
4,095,003 - AO356_18170 0.32 -2.0
4,095,003 - AO356_18170 0.32 -0.1
4,095,203 + AO356_18170 0.39 -0.3
4,095,230 + AO356_18170 0.40 -0.3
4,095,276 - AO356_18170 0.41 +0.3
4,095,902 + AO356_18170 0.63 -0.1
4,095,911 + AO356_18170 0.64 +0.2
4,095,911 + AO356_18170 0.64 +0.6
4,095,911 + AO356_18170 0.64 -0.2
4,095,911 + AO356_18170 0.64 -2.0
4,095,911 + AO356_18170 0.64 +0.9
4,095,912 - AO356_18170 0.64 +0.7
4,095,912 - AO356_18170 0.64 +0.5
4,095,912 - AO356_18170 0.64 -0.2
4,096,097 + AO356_18170 0.70 +1.2
4,096,097 + AO356_18170 0.70 -0.1
4,096,098 - AO356_18170 0.70 +0.3
4,096,098 - AO356_18170 0.70 -0.3
4,096,098 - AO356_18170 0.70 -0.8
4,096,098 - AO356_18170 0.70 -0.8
4,096,098 - AO356_18170 0.70 +0.6
4,096,098 - AO356_18170 0.70 +0.8
4,096,393 + AO356_18170 0.81 +0.1
4,096,393 + AO356_18170 0.81 -0.1
4,096,393 + AO356_18170 0.81 +0.2
4,096,611 - AO356_18170 0.88 +0.2
4,096,611 - AO356_18170 0.88 +1.4
4,096,619 + AO356_18170 0.89 -1.5
4,096,620 - AO356_18170 0.89 -0.2
4,096,620 - AO356_18170 0.89 -2.3
4,096,620 - AO356_18170 0.89 -0.2
4,096,620 - AO356_18170 0.89 +1.0
4,096,628 + AO356_18170 0.89 +0.3
4,096,629 - AO356_18170 0.89 -0.8
4,096,685 + -1.4
4,096,685 + +1.2
4,096,685 + +0.8
4,096,685 + +0.6
4,096,685 + -2.0
4,096,685 + -0.2
4,096,685 + +0.8
4,096,685 + +0.8
4,096,685 + +0.4
4,096,685 + -0.3
4,096,686 - -0.3
4,096,686 - +0.1
4,096,686 - +0.5
4,096,686 - +0.0
4,096,686 - +0.5
4,096,686 - -1.7
4,096,688 + -0.1
4,096,688 + +0.3
4,096,703 + -0.6
4,096,703 + +0.2
4,096,703 + +0.5
4,096,703 + +1.1
4,096,703 + -1.1
4,096,704 - +0.5
4,096,704 - +0.3
4,096,704 - -0.6
4,096,704 - -0.5
4,096,704 - -0.2
4,096,989 + -0.3
4,096,989 + +0.7
4,096,989 + -0.4
4,096,990 - -0.7
4,097,011 + AO356_18175 0.15 +0.5
4,097,038 + AO356_18175 0.22 +0.4
4,097,039 - AO356_18175 0.22 +0.6
4,097,142 + AO356_18175 0.49 -0.5
4,097,142 + AO356_18175 0.49 +0.1
4,097,142 + AO356_18175 0.49 -0.3
4,097,142 + AO356_18175 0.49 +0.1
4,097,142 + AO356_18175 0.49 +1.0
4,097,142 + AO356_18175 0.49 +0.5
4,097,142 + AO356_18175 0.49 -1.1
4,097,142 + AO356_18175 0.49 -0.6
4,097,142 + AO356_18175 0.49 -0.3
4,097,142 + AO356_18175 0.49 -0.1
4,097,142 + AO356_18175 0.49 +0.8
4,097,142 + AO356_18175 0.49 -0.1
4,097,143 - AO356_18175 0.49 +0.1
4,097,143 - AO356_18175 0.49 +0.1
4,097,143 - AO356_18175 0.49 +0.5
4,097,143 - AO356_18175 0.49 +0.1
4,097,143 - AO356_18175 0.49 +0.6
4,097,143 - AO356_18175 0.49 +0.3
4,097,143 - AO356_18175 0.49 +0.3
4,097,143 - AO356_18175 0.49 -0.2
4,097,143 - AO356_18175 0.49 -1.0
4,097,143 - AO356_18175 0.49 +0.1
4,097,199 + AO356_18175 0.64 +0.1
4,097,199 + AO356_18175 0.64 +0.1
4,097,199 + AO356_18175 0.64 +0.7
4,097,270 + AO356_18175 0.82 -0.1
4,097,270 + AO356_18175 0.82 -0.4
4,097,271 - AO356_18175 0.82 +0.1
4,097,410 - +1.3
4,097,410 - -0.8
4,097,410 - -0.5
4,097,410 - -1.0
4,097,410 - +0.6
4,097,411 + -0.3
4,097,411 + +0.0
4,097,439 - -0.3
4,097,441 + +0.4
4,097,454 - +0.1
4,097,454 - +0.4
4,097,612 + -0.2
4,097,900 + +0.9
4,097,901 - +1.3
4,097,901 - +1.2
4,097,910 - +0.0

Or see this region's nucleotide sequence