Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16535

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16530 and AO356_16535 are separated by 12 nucleotidesAO356_16535 and AO356_16540 overlap by 1 nucleotides AO356_16530: AO356_16530 - deoxyribodipyrimidine photolyase, at 3,732,849 to 3,734,300 _16530 AO356_16535: AO356_16535 - MerR family transcriptional regulator, at 3,734,313 to 3,735,260 _16535 AO356_16540: AO356_16540 - hypothetical protein, at 3,735,260 to 3,736,222 _16540 Position (kb) 3734 3735 3736Strain fitness (log2 ratio) -1 0 1 2at 3733.447 kb on + strand, within AO356_16530at 3733.447 kb on + strand, within AO356_16530at 3733.447 kb on + strand, within AO356_16530at 3733.447 kb on + strand, within AO356_16530at 3733.448 kb on - strand, within AO356_16530at 3733.448 kb on - strand, within AO356_16530at 3733.630 kb on + strand, within AO356_16530at 3733.631 kb on - strand, within AO356_16530at 3733.832 kb on - strand, within AO356_16530at 3733.832 kb on - strand, within AO356_16530at 3733.832 kb on - strand, within AO356_16530at 3733.832 kb on - strand, within AO356_16530at 3733.832 kb on - strand, within AO356_16530at 3733.867 kb on + strand, within AO356_16530at 3733.867 kb on + strand, within AO356_16530at 3733.867 kb on + strand, within AO356_16530at 3733.996 kb on + strand, within AO356_16530at 3733.996 kb on + strand, within AO356_16530at 3733.997 kb on - strand, within AO356_16530at 3733.997 kb on - strand, within AO356_16530at 3733.997 kb on - strand, within AO356_16530at 3734.040 kb on + strand, within AO356_16530at 3734.040 kb on + strand, within AO356_16530at 3734.040 kb on + strand, within AO356_16530at 3734.040 kb on + strand, within AO356_16530at 3734.040 kb on + strand, within AO356_16530at 3734.041 kb on - strand, within AO356_16530at 3734.041 kb on - strand, within AO356_16530at 3734.041 kb on - strand, within AO356_16530at 3734.041 kb on - strand, within AO356_16530at 3734.041 kb on - strand, within AO356_16530at 3734.041 kb on - strand, within AO356_16530at 3734.041 kb on - strand, within AO356_16530at 3734.210 kb on - strandat 3734.210 kb on - strandat 3734.210 kb on - strandat 3734.314 kb on + strandat 3734.314 kb on + strandat 3734.314 kb on + strandat 3734.314 kb on + strandat 3734.314 kb on + strandat 3734.314 kb on + strandat 3734.314 kb on + strandat 3734.315 kb on - strandat 3734.315 kb on - strandat 3734.315 kb on - strandat 3734.315 kb on - strandat 3734.315 kb on - strandat 3734.506 kb on + strand, within AO356_16535at 3734.506 kb on + strand, within AO356_16535at 3734.506 kb on + strand, within AO356_16535at 3734.507 kb on - strand, within AO356_16535at 3734.507 kb on - strand, within AO356_16535at 3734.507 kb on - strand, within AO356_16535at 3734.507 kb on - strand, within AO356_16535at 3734.507 kb on - strand, within AO356_16535at 3734.704 kb on + strand, within AO356_16535at 3734.704 kb on + strand, within AO356_16535at 3734.704 kb on + strand, within AO356_16535at 3734.704 kb on + strand, within AO356_16535at 3734.705 kb on - strand, within AO356_16535at 3734.705 kb on - strand, within AO356_16535at 3734.741 kb on - strand, within AO356_16535at 3734.845 kb on + strand, within AO356_16535at 3734.846 kb on - strand, within AO356_16535at 3735.177 kb on + strandat 3735.307 kb on - strandat 3735.307 kb on - strandat 3735.324 kb on + strandat 3735.324 kb on + strandat 3735.324 kb on + strandat 3735.324 kb on + strandat 3735.325 kb on - strandat 3735.325 kb on - strandat 3735.325 kb on - strandat 3735.419 kb on + strand, within AO356_16540at 3735.419 kb on + strand, within AO356_16540at 3735.419 kb on + strand, within AO356_16540at 3735.419 kb on + strand, within AO356_16540at 3735.419 kb on + strand, within AO356_16540at 3735.419 kb on + strand, within AO356_16540at 3735.419 kb on + strand, within AO356_16540at 3735.419 kb on + strand, within AO356_16540at 3735.420 kb on - strand, within AO356_16540at 3735.420 kb on - strand, within AO356_16540at 3735.420 kb on - strand, within AO356_16540at 3735.540 kb on + strand, within AO356_16540at 3735.540 kb on + strand, within AO356_16540at 3735.541 kb on - strand, within AO356_16540at 3735.541 kb on - strand, within AO356_16540at 3735.606 kb on + strand, within AO356_16540at 3735.606 kb on + strand, within AO356_16540at 3735.606 kb on + strand, within AO356_16540at 3735.606 kb on + strand, within AO356_16540at 3735.606 kb on + strand, within AO356_16540at 3735.606 kb on + strand, within AO356_16540at 3735.607 kb on - strand, within AO356_16540at 3735.607 kb on - strand, within AO356_16540at 3735.607 kb on - strand, within AO356_16540at 3735.636 kb on + strand, within AO356_16540at 3735.636 kb on + strand, within AO356_16540at 3735.636 kb on + strand, within AO356_16540at 3735.636 kb on + strand, within AO356_16540at 3735.637 kb on - strand, within AO356_16540at 3735.637 kb on - strand, within AO356_16540at 3735.637 kb on - strand, within AO356_16540at 3735.637 kb on - strand, within AO356_16540at 3735.637 kb on - strand, within AO356_16540at 3735.643 kb on - strand, within AO356_16540at 3735.643 kb on - strand, within AO356_16540at 3735.711 kb on + strand, within AO356_16540at 3735.712 kb on - strand, within AO356_16540at 3735.712 kb on - strand, within AO356_16540at 3735.816 kb on + strand, within AO356_16540at 3735.816 kb on + strand, within AO356_16540at 3735.816 kb on + strand, within AO356_16540at 3735.816 kb on + strand, within AO356_16540at 3735.816 kb on + strand, within AO356_16540at 3735.816 kb on + strand, within AO356_16540at 3735.816 kb on + strand, within AO356_16540at 3735.816 kb on + strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.817 kb on - strand, within AO356_16540at 3735.820 kb on + strand, within AO356_16540at 3735.820 kb on + strand, within AO356_16540at 3735.820 kb on + strand, within AO356_16540at 3735.821 kb on - strand, within AO356_16540at 3735.821 kb on - strand, within AO356_16540at 3735.821 kb on - strand, within AO356_16540at 3735.861 kb on + strand, within AO356_16540at 3735.861 kb on + strand, within AO356_16540at 3735.861 kb on + strand, within AO356_16540at 3735.861 kb on + strand, within AO356_16540at 3735.862 kb on - strand, within AO356_16540at 3735.862 kb on - strand, within AO356_16540at 3735.862 kb on - strand, within AO356_16540at 3735.862 kb on - strand, within AO356_16540at 3735.862 kb on - strand, within AO356_16540at 3735.913 kb on - strand, within AO356_16540at 3735.954 kb on + strand, within AO356_16540at 3735.955 kb on - strand, within AO356_16540at 3736.101 kb on + strand, within AO356_16540at 3736.101 kb on + strand, within AO356_16540at 3736.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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3,733,447 + AO356_16530 0.41 +0.4
3,733,447 + AO356_16530 0.41 -0.1
3,733,447 + AO356_16530 0.41 -1.1
3,733,447 + AO356_16530 0.41 -0.2
3,733,448 - AO356_16530 0.41 +0.6
3,733,448 - AO356_16530 0.41 -0.3
3,733,630 + AO356_16530 0.54 -0.8
3,733,631 - AO356_16530 0.54 +0.6
3,733,832 - AO356_16530 0.68 -0.5
3,733,832 - AO356_16530 0.68 +1.7
3,733,832 - AO356_16530 0.68 +0.6
3,733,832 - AO356_16530 0.68 -0.1
3,733,832 - AO356_16530 0.68 +1.2
3,733,867 + AO356_16530 0.70 +0.3
3,733,867 + AO356_16530 0.70 +0.3
3,733,867 + AO356_16530 0.70 +0.4
3,733,996 + AO356_16530 0.79 +0.7
3,733,996 + AO356_16530 0.79 +0.6
3,733,997 - AO356_16530 0.79 +0.2
3,733,997 - AO356_16530 0.79 +1.1
3,733,997 - AO356_16530 0.79 +0.8
3,734,040 + AO356_16530 0.82 +0.3
3,734,040 + AO356_16530 0.82 -0.2
3,734,040 + AO356_16530 0.82 +1.2
3,734,040 + AO356_16530 0.82 +0.3
3,734,040 + AO356_16530 0.82 +0.2
3,734,041 - AO356_16530 0.82 +0.5
3,734,041 - AO356_16530 0.82 +0.7
3,734,041 - AO356_16530 0.82 -0.1
3,734,041 - AO356_16530 0.82 +1.4
3,734,041 - AO356_16530 0.82 -0.1
3,734,041 - AO356_16530 0.82 +0.2
3,734,041 - AO356_16530 0.82 -0.9
3,734,210 - +0.6
3,734,210 - +0.0
3,734,210 - +0.9
3,734,314 + +0.2
3,734,314 + -0.7
3,734,314 + +1.2
3,734,314 + -0.3
3,734,314 + +0.0
3,734,314 + +0.6
3,734,314 + +0.4
3,734,315 - +1.2
3,734,315 - -0.5
3,734,315 - -0.5
3,734,315 - -1.1
3,734,315 - +0.3
3,734,506 + AO356_16535 0.20 +0.1
3,734,506 + AO356_16535 0.20 +0.7
3,734,506 + AO356_16535 0.20 +1.2
3,734,507 - AO356_16535 0.20 +1.4
3,734,507 - AO356_16535 0.20 +1.6
3,734,507 - AO356_16535 0.20 +1.1
3,734,507 - AO356_16535 0.20 +0.4
3,734,507 - AO356_16535 0.20 +1.2
3,734,704 + AO356_16535 0.41 +2.4
3,734,704 + AO356_16535 0.41 +1.3
3,734,704 + AO356_16535 0.41 +1.5
3,734,704 + AO356_16535 0.41 +1.3
3,734,705 - AO356_16535 0.41 +0.4
3,734,705 - AO356_16535 0.41 +1.2
3,734,741 - AO356_16535 0.45 +0.9
3,734,845 + AO356_16535 0.56 +1.1
3,734,846 - AO356_16535 0.56 +1.6
3,735,177 + +0.4
3,735,307 - +0.5
3,735,307 - +0.7
3,735,324 + +1.0
3,735,324 + +0.8
3,735,324 + +0.3
3,735,324 + +0.1
3,735,325 - -0.2
3,735,325 - -0.2
3,735,325 - +1.1
3,735,419 + AO356_16540 0.17 -0.2
3,735,419 + AO356_16540 0.17 +0.9
3,735,419 + AO356_16540 0.17 +0.5
3,735,419 + AO356_16540 0.17 +1.3
3,735,419 + AO356_16540 0.17 +0.8
3,735,419 + AO356_16540 0.17 +0.6
3,735,419 + AO356_16540 0.17 +0.7
3,735,419 + AO356_16540 0.17 +0.9
3,735,420 - AO356_16540 0.17 +0.8
3,735,420 - AO356_16540 0.17 +0.5
3,735,420 - AO356_16540 0.17 -0.3
3,735,540 + AO356_16540 0.29 +0.2
3,735,540 + AO356_16540 0.29 +0.4
3,735,541 - AO356_16540 0.29 +0.6
3,735,541 - AO356_16540 0.29 +0.5
3,735,606 + AO356_16540 0.36 +1.1
3,735,606 + AO356_16540 0.36 +1.2
3,735,606 + AO356_16540 0.36 +1.3
3,735,606 + AO356_16540 0.36 -0.1
3,735,606 + AO356_16540 0.36 +0.6
3,735,606 + AO356_16540 0.36 +0.1
3,735,607 - AO356_16540 0.36 -0.8
3,735,607 - AO356_16540 0.36 -0.4
3,735,607 - AO356_16540 0.36 -0.2
3,735,636 + AO356_16540 0.39 +1.7
3,735,636 + AO356_16540 0.39 +0.6
3,735,636 + AO356_16540 0.39 +1.9
3,735,636 + AO356_16540 0.39 +0.2
3,735,637 - AO356_16540 0.39 -0.8
3,735,637 - AO356_16540 0.39 -0.1
3,735,637 - AO356_16540 0.39 -0.4
3,735,637 - AO356_16540 0.39 +0.0
3,735,637 - AO356_16540 0.39 +0.8
3,735,643 - AO356_16540 0.40 +1.2
3,735,643 - AO356_16540 0.40 -0.7
3,735,711 + AO356_16540 0.47 -0.9
3,735,712 - AO356_16540 0.47 -0.2
3,735,712 - AO356_16540 0.47 +0.6
3,735,816 + AO356_16540 0.58 +0.6
3,735,816 + AO356_16540 0.58 +0.8
3,735,816 + AO356_16540 0.58 +1.0
3,735,816 + AO356_16540 0.58 +0.2
3,735,816 + AO356_16540 0.58 +1.2
3,735,816 + AO356_16540 0.58 +0.9
3,735,816 + AO356_16540 0.58 +1.6
3,735,816 + AO356_16540 0.58 +1.0
3,735,817 - AO356_16540 0.58 +0.0
3,735,817 - AO356_16540 0.58 -0.3
3,735,817 - AO356_16540 0.58 +0.4
3,735,817 - AO356_16540 0.58 +0.3
3,735,817 - AO356_16540 0.58 +0.1
3,735,817 - AO356_16540 0.58 -0.3
3,735,817 - AO356_16540 0.58 -0.0
3,735,817 - AO356_16540 0.58 +1.0
3,735,817 - AO356_16540 0.58 +0.6
3,735,817 - AO356_16540 0.58 +1.1
3,735,817 - AO356_16540 0.58 +0.7
3,735,820 + AO356_16540 0.58 +1.8
3,735,820 + AO356_16540 0.58 +2.2
3,735,820 + AO356_16540 0.58 +0.9
3,735,821 - AO356_16540 0.58 +0.0
3,735,821 - AO356_16540 0.58 -0.3
3,735,821 - AO356_16540 0.58 +0.7
3,735,861 + AO356_16540 0.62 +1.0
3,735,861 + AO356_16540 0.62 +2.2
3,735,861 + AO356_16540 0.62 +1.4
3,735,861 + AO356_16540 0.62 -1.4
3,735,862 - AO356_16540 0.63 +0.0
3,735,862 - AO356_16540 0.63 -0.2
3,735,862 - AO356_16540 0.63 -0.0
3,735,862 - AO356_16540 0.63 +0.6
3,735,862 - AO356_16540 0.63 -0.7
3,735,913 - AO356_16540 0.68 +0.5
3,735,954 + AO356_16540 0.72 +0.1
3,735,955 - AO356_16540 0.72 +0.3
3,736,101 + AO356_16540 0.87 -0.1
3,736,101 + AO356_16540 0.87 +1.1
3,736,257 + +0.6

Or see this region's nucleotide sequence