Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03075

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03070 and AO356_03075 overlap by 17 nucleotidesAO356_03075 and AO356_03080 overlap by 4 nucleotidesAO356_03080 and AO356_03085 are separated by 186 nucleotides AO356_03070: AO356_03070 - histidine kinase, at 686,542 to 688,863 _03070 AO356_03075: AO356_03075 - MarR family transcriptional regulator, at 688,847 to 689,308 _03075 AO356_03080: AO356_03080 - glutathione peroxidase, at 689,305 to 689,790 _03080 AO356_03085: AO356_03085 - peptide methionine sulfoxide reductase, at 689,977 to 690,372 _03085 Position (kb) 688 689 690Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 688.161 kb on - strand, within AO356_03070at 688.161 kb on - strand, within AO356_03070at 688.195 kb on + strand, within AO356_03070at 688.195 kb on + strand, within AO356_03070at 688.195 kb on + strand, within AO356_03070at 688.196 kb on - strand, within AO356_03070at 688.321 kb on + strand, within AO356_03070at 688.322 kb on - strand, within AO356_03070at 688.371 kb on - strand, within AO356_03070at 688.371 kb on - strand, within AO356_03070at 688.371 kb on - strand, within AO356_03070at 688.371 kb on - strand, within AO356_03070at 688.786 kb on + strandat 688.787 kb on - strandat 688.787 kb on - strandat 688.787 kb on - strandat 688.848 kb on + strandat 688.849 kb on - strandat 688.849 kb on - strandat 688.849 kb on - strandat 689.178 kb on + strand, within AO356_03075at 689.178 kb on + strand, within AO356_03075at 689.179 kb on - strand, within AO356_03075at 689.187 kb on + strand, within AO356_03075at 689.187 kb on + strand, within AO356_03075at 689.220 kb on + strand, within AO356_03075at 689.250 kb on + strand, within AO356_03075at 689.250 kb on + strand, within AO356_03075at 689.250 kb on + strand, within AO356_03075at 689.251 kb on - strand, within AO356_03075at 689.458 kb on - strand, within AO356_03080at 689.458 kb on - strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.634 kb on - strand, within AO356_03080at 689.634 kb on - strand, within AO356_03080at 689.634 kb on - strand, within AO356_03080at 689.634 kb on - strand, within AO356_03080at 689.663 kb on + strand, within AO356_03080at 689.664 kb on - strand, within AO356_03080at 689.664 kb on - strand, within AO356_03080at 689.664 kb on - strand, within AO356_03080at 689.664 kb on - strand, within AO356_03080at 689.805 kb on + strandat 689.805 kb on + strandat 689.805 kb on + strandat 689.806 kb on - strandat 689.853 kb on - strandat 689.855 kb on + strandat 689.971 kb on + strandat 689.971 kb on + strandat 689.971 kb on + strandat 689.971 kb on + strandat 689.972 kb on - strandat 689.972 kb on - strandat 690.020 kb on + strand, within AO356_03085at 690.161 kb on + strand, within AO356_03085at 690.161 kb on + strand, within AO356_03085at 690.239 kb on + strand, within AO356_03085at 690.239 kb on + strand, within AO356_03085at 690.239 kb on + strand, within AO356_03085at 690.240 kb on - strand, within AO356_03085at 690.266 kb on + strand, within AO356_03085at 690.266 kb on + strand, within AO356_03085at 690.266 kb on + strand, within AO356_03085at 690.266 kb on + strand, within AO356_03085at 690.266 kb on + strand, within AO356_03085at 690.267 kb on - strand, within AO356_03085at 690.267 kb on - strand, within AO356_03085

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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687,988 + AO356_03070 0.62 -0.5
687,988 + AO356_03070 0.62 +1.6
687,988 + AO356_03070 0.62 +0.5
687,988 + AO356_03070 0.62 -1.7
687,988 + AO356_03070 0.62 -1.1
687,988 + AO356_03070 0.62 -0.9
687,988 + AO356_03070 0.62 -2.5
687,988 + AO356_03070 0.62 -4.1
687,989 - AO356_03070 0.62 -1.9
687,989 - AO356_03070 0.62 -2.5
687,989 - AO356_03070 0.62 -1.3
687,989 - AO356_03070 0.62 +0.1
687,989 - AO356_03070 0.62 -1.3
687,989 - AO356_03070 0.62 -0.6
687,989 - AO356_03070 0.62 -1.1
688,161 - AO356_03070 0.70 -0.2
688,161 - AO356_03070 0.70 -1.4
688,195 + AO356_03070 0.71 -0.5
688,195 + AO356_03070 0.71 -0.6
688,195 + AO356_03070 0.71 -1.5
688,196 - AO356_03070 0.71 -1.5
688,321 + AO356_03070 0.77 -2.1
688,322 - AO356_03070 0.77 +1.6
688,371 - AO356_03070 0.79 -2.0
688,371 - AO356_03070 0.79 -1.9
688,371 - AO356_03070 0.79 -1.5
688,371 - AO356_03070 0.79 -1.5
688,786 + -0.8
688,787 - -1.5
688,787 - -1.6
688,787 - -2.8
688,848 + +0.1
688,849 - -0.9
688,849 - -0.1
688,849 - -0.7
689,178 + AO356_03075 0.72 -0.1
689,178 + AO356_03075 0.72 -0.4
689,179 - AO356_03075 0.72 +0.8
689,187 + AO356_03075 0.74 -0.4
689,187 + AO356_03075 0.74 +0.0
689,220 + AO356_03075 0.81 +0.7
689,250 + AO356_03075 0.87 +0.7
689,250 + AO356_03075 0.87 +0.4
689,250 + AO356_03075 0.87 +0.8
689,251 - AO356_03075 0.87 -1.8
689,458 - AO356_03080 0.31 +0.2
689,458 - AO356_03080 0.31 +0.5
689,633 + AO356_03080 0.67 -0.8
689,633 + AO356_03080 0.67 +0.4
689,633 + AO356_03080 0.67 +0.2
689,633 + AO356_03080 0.67 +0.2
689,633 + AO356_03080 0.67 -0.4
689,634 - AO356_03080 0.68 +0.2
689,634 - AO356_03080 0.68 -0.0
689,634 - AO356_03080 0.68 +1.5
689,634 - AO356_03080 0.68 +0.3
689,663 + AO356_03080 0.74 +0.3
689,664 - AO356_03080 0.74 +0.1
689,664 - AO356_03080 0.74 -1.1
689,664 - AO356_03080 0.74 -1.7
689,664 - AO356_03080 0.74 +0.2
689,805 + +0.8
689,805 + -0.2
689,805 + +0.6
689,806 - +1.0
689,853 - -0.1
689,855 + +0.1
689,971 + +0.6
689,971 + +0.6
689,971 + +0.3
689,971 + +0.5
689,972 - -0.3
689,972 - +0.2
690,020 + AO356_03085 0.11 +0.2
690,161 + AO356_03085 0.46 -0.4
690,161 + AO356_03085 0.46 +0.1
690,239 + AO356_03085 0.66 +1.5
690,239 + AO356_03085 0.66 +0.7
690,239 + AO356_03085 0.66 -0.4
690,240 - AO356_03085 0.66 -0.3
690,266 + AO356_03085 0.73 +0.5
690,266 + AO356_03085 0.73 -0.1
690,266 + AO356_03085 0.73 +0.3
690,266 + AO356_03085 0.73 +0.6
690,266 + AO356_03085 0.73 -0.2
690,267 - AO356_03085 0.73 +0.1
690,267 - AO356_03085 0.73 +0.4

Or see this region's nucleotide sequence