Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26710

Experiment: LB 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_26700 and AO353_26705 are separated by 99 nucleotidesAO353_26705 and AO353_26710 are separated by 241 nucleotidesAO353_26710 and AO353_26715 are separated by 25 nucleotidesAO353_26715 and AO353_26720 are separated by 14 nucleotides AO353_26700: AO353_26700 - peptidylprolyl isomerase, at 5,845,094 to 5,845,432 _26700 AO353_26705: AO353_26705 - hypothetical protein, at 5,845,532 to 5,845,840 _26705 AO353_26710: AO353_26710 - citrate-proton symporter, at 5,846,082 to 5,847,386 _26710 AO353_26715: AO353_26715 - molybdenum ABC transporter substrate-binding protein, at 5,847,412 to 5,848,188 _26715 AO353_26720: AO353_26720 - LysR family transcriptional regulator, at 5,848,203 to 5,849,120 _26720 Position (kb) 5846 5847 5848Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5845.086 kb on - strandat 5845.122 kb on - strandat 5845.182 kb on + strand, within AO353_26700at 5845.182 kb on + strand, within AO353_26700at 5845.328 kb on - strand, within AO353_26700at 5845.360 kb on + strandat 5845.361 kb on - strand, within AO353_26700at 5845.434 kb on - strandat 5845.459 kb on - strandat 5845.590 kb on + strand, within AO353_26705at 5845.590 kb on + strand, within AO353_26705at 5845.590 kb on + strand, within AO353_26705at 5845.590 kb on + strand, within AO353_26705at 5845.590 kb on + strand, within AO353_26705at 5845.590 kb on + strand, within AO353_26705at 5845.590 kb on + strand, within AO353_26705at 5845.590 kb on + strand, within AO353_26705at 5845.590 kb on + strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.591 kb on - strand, within AO353_26705at 5845.607 kb on + strand, within AO353_26705at 5845.607 kb on + strand, within AO353_26705at 5845.634 kb on - strand, within AO353_26705at 5845.684 kb on - strand, within AO353_26705at 5845.684 kb on - strand, within AO353_26705at 5845.684 kb on - strand, within AO353_26705at 5845.684 kb on - strand, within AO353_26705at 5845.786 kb on + strand, within AO353_26705at 5845.786 kb on + strand, within AO353_26705at 5845.786 kb on + strand, within AO353_26705at 5845.844 kb on + strandat 5845.844 kb on + strandat 5845.844 kb on + strandat 5845.845 kb on - strandat 5845.845 kb on - strandat 5845.845 kb on - strandat 5845.876 kb on - strandat 5845.922 kb on + strandat 5845.923 kb on - strandat 5845.923 kb on - strandat 5845.923 kb on - strandat 5845.964 kb on + strandat 5845.964 kb on + strandat 5845.981 kb on + strandat 5845.981 kb on + strandat 5845.982 kb on - strandat 5845.982 kb on - strandat 5845.985 kb on + strandat 5845.985 kb on + strandat 5845.986 kb on - strandat 5845.986 kb on - strandat 5845.986 kb on - strandat 5845.993 kb on + strandat 5845.993 kb on + strandat 5845.993 kb on + strandat 5845.993 kb on + strandat 5845.994 kb on - strandat 5845.994 kb on - strandat 5845.994 kb on - strandat 5845.994 kb on - strandat 5845.994 kb on - strandat 5845.994 kb on - strandat 5845.994 kb on - strandat 5845.994 kb on - strandat 5846.029 kb on - strandat 5846.029 kb on - strandat 5846.031 kb on + strandat 5846.031 kb on + strandat 5846.032 kb on - strandat 5846.032 kb on - strandat 5846.032 kb on - strandat 5846.032 kb on - strandat 5846.034 kb on + strandat 5846.034 kb on + strandat 5846.061 kb on + strandat 5846.062 kb on - strandat 5846.090 kb on + strandat 5846.091 kb on - strandat 5846.197 kb on - strandat 5846.205 kb on + strandat 5846.205 kb on + strandat 5846.205 kb on + strandat 5846.205 kb on + strandat 5846.205 kb on + strandat 5846.205 kb on + strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.206 kb on - strandat 5846.207 kb on + strandat 5846.208 kb on - strandat 5846.208 kb on - strandat 5846.322 kb on + strand, within AO353_26710at 5846.322 kb on + strand, within AO353_26710at 5846.322 kb on + strand, within AO353_26710at 5846.322 kb on + strand, within AO353_26710at 5846.322 kb on + strand, within AO353_26710at 5846.322 kb on + strand, within AO353_26710at 5846.322 kb on + strand, within AO353_26710at 5846.323 kb on - strand, within AO353_26710at 5846.323 kb on - strand, within AO353_26710at 5846.323 kb on - strand, within AO353_26710at 5846.323 kb on - strand, within AO353_26710at 5846.323 kb on - strand, within AO353_26710at 5846.508 kb on + strand, within AO353_26710at 5846.508 kb on + strand, within AO353_26710at 5846.509 kb on - strand, within AO353_26710at 5846.697 kb on - strand, within AO353_26710at 5846.850 kb on + strand, within AO353_26710at 5847.057 kb on + strand, within AO353_26710at 5847.057 kb on + strand, within AO353_26710at 5847.058 kb on - strand, within AO353_26710at 5847.058 kb on - strand, within AO353_26710at 5847.058 kb on - strand, within AO353_26710at 5847.058 kb on - strand, within AO353_26710at 5847.130 kb on - strand, within AO353_26710at 5847.130 kb on - strand, within AO353_26710at 5847.130 kb on - strand, within AO353_26710at 5847.205 kb on - strand, within AO353_26710at 5847.224 kb on - strand, within AO353_26710at 5847.224 kb on - strand, within AO353_26710at 5847.268 kb on - strandat 5847.268 kb on - strandat 5847.339 kb on + strandat 5847.339 kb on + strandat 5847.339 kb on + strandat 5847.340 kb on - strandat 5847.340 kb on - strandat 5847.340 kb on - strandat 5847.346 kb on - strandat 5847.367 kb on + strandat 5847.367 kb on + strandat 5847.368 kb on - strandat 5847.384 kb on + strandat 5847.385 kb on - strandat 5847.385 kb on - strandat 5847.407 kb on + strandat 5847.422 kb on + strandat 5847.526 kb on + strand, within AO353_26715at 5847.526 kb on + strand, within AO353_26715at 5847.527 kb on - strand, within AO353_26715at 5847.527 kb on - strand, within AO353_26715at 5847.528 kb on + strand, within AO353_26715at 5847.528 kb on + strand, within AO353_26715at 5847.529 kb on - strand, within AO353_26715at 5847.529 kb on - strand, within AO353_26715at 5847.536 kb on + strand, within AO353_26715at 5847.537 kb on - strand, within AO353_26715at 5847.835 kb on + strand, within AO353_26715at 5847.836 kb on - strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.860 kb on - strand, within AO353_26715at 5847.860 kb on - strand, within AO353_26715at 5847.968 kb on - strand, within AO353_26715at 5848.124 kb on - strandat 5848.244 kb on + strandat 5848.341 kb on + strand, within AO353_26720

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
remove
5,845,086 - -0.4
5,845,122 - +1.1
5,845,182 + AO353_26700 0.26 +0.5
5,845,182 + AO353_26700 0.26 -0.3
5,845,328 - AO353_26700 0.69 +0.6
5,845,360 + -0.7
5,845,361 - AO353_26700 0.79 -0.3
5,845,434 - -2.0
5,845,459 - -1.5
5,845,590 + AO353_26705 0.19 -1.1
5,845,590 + AO353_26705 0.19 -0.1
5,845,590 + AO353_26705 0.19 -0.3
5,845,590 + AO353_26705 0.19 -0.4
5,845,590 + AO353_26705 0.19 +0.3
5,845,590 + AO353_26705 0.19 -0.4
5,845,590 + AO353_26705 0.19 +0.3
5,845,590 + AO353_26705 0.19 -0.2
5,845,590 + AO353_26705 0.19 -1.8
5,845,591 - AO353_26705 0.19 -0.7
5,845,591 - AO353_26705 0.19 -0.6
5,845,591 - AO353_26705 0.19 -0.1
5,845,591 - AO353_26705 0.19 -0.5
5,845,591 - AO353_26705 0.19 -0.7
5,845,591 - AO353_26705 0.19 -0.2
5,845,591 - AO353_26705 0.19 -1.0
5,845,591 - AO353_26705 0.19 +0.9
5,845,591 - AO353_26705 0.19 +0.8
5,845,591 - AO353_26705 0.19 -0.4
5,845,591 - AO353_26705 0.19 -0.8
5,845,591 - AO353_26705 0.19 -0.1
5,845,591 - AO353_26705 0.19 -0.2
5,845,607 + AO353_26705 0.24 -0.4
5,845,607 + AO353_26705 0.24 +0.0
5,845,634 - AO353_26705 0.33 +0.7
5,845,684 - AO353_26705 0.49 +0.4
5,845,684 - AO353_26705 0.49 -1.4
5,845,684 - AO353_26705 0.49 +1.7
5,845,684 - AO353_26705 0.49 +0.4
5,845,786 + AO353_26705 0.82 -1.2
5,845,786 + AO353_26705 0.82 +1.1
5,845,786 + AO353_26705 0.82 +1.3
5,845,844 + -1.5
5,845,844 + -0.2
5,845,844 + -1.3
5,845,845 - -0.7
5,845,845 - -0.8
5,845,845 - +0.9
5,845,876 - +0.2
5,845,922 + -0.7
5,845,923 - +0.5
5,845,923 - -0.5
5,845,923 - +1.1
5,845,964 + +0.2
5,845,964 + -0.5
5,845,981 + +1.6
5,845,981 + +0.1
5,845,982 - +0.2
5,845,982 - -0.6
5,845,985 + -0.4
5,845,985 + +1.9
5,845,986 - -0.7
5,845,986 - +1.6
5,845,986 - -0.2
5,845,993 + -0.2
5,845,993 + +1.8
5,845,993 + -0.1
5,845,993 + +0.9
5,845,994 - +0.8
5,845,994 - +0.7
5,845,994 - -0.7
5,845,994 - +0.9
5,845,994 - -0.8
5,845,994 - -0.7
5,845,994 - +0.1
5,845,994 - +1.0
5,846,029 - +0.3
5,846,029 - +0.2
5,846,031 + -0.1
5,846,031 + -1.5
5,846,032 - -0.6
5,846,032 - -0.1
5,846,032 - -0.1
5,846,032 - +0.3
5,846,034 + -2.0
5,846,034 + +0.2
5,846,061 + +1.1
5,846,062 - +1.3
5,846,090 + -0.7
5,846,091 - +0.8
5,846,197 - +0.7
5,846,205 + +0.5
5,846,205 + -0.1
5,846,205 + +1.0
5,846,205 + -0.2
5,846,205 + -0.7
5,846,205 + -0.0
5,846,206 - -0.6
5,846,206 - +0.7
5,846,206 - -0.1
5,846,206 - -1.1
5,846,206 - -0.5
5,846,206 - -0.1
5,846,206 - +1.3
5,846,206 - +0.3
5,846,206 - -0.0
5,846,206 - -0.9
5,846,206 - -0.6
5,846,207 + +0.7
5,846,208 - -0.8
5,846,208 - -0.9
5,846,322 + AO353_26710 0.18 -0.1
5,846,322 + AO353_26710 0.18 +0.4
5,846,322 + AO353_26710 0.18 -0.3
5,846,322 + AO353_26710 0.18 +0.6
5,846,322 + AO353_26710 0.18 +0.6
5,846,322 + AO353_26710 0.18 -2.0
5,846,322 + AO353_26710 0.18 +0.4
5,846,323 - AO353_26710 0.18 +0.7
5,846,323 - AO353_26710 0.18 +1.3
5,846,323 - AO353_26710 0.18 -1.1
5,846,323 - AO353_26710 0.18 -0.4
5,846,323 - AO353_26710 0.18 +0.0
5,846,508 + AO353_26710 0.33 -0.5
5,846,508 + AO353_26710 0.33 -3.6
5,846,509 - AO353_26710 0.33 -0.3
5,846,697 - AO353_26710 0.47 +0.7
5,846,850 + AO353_26710 0.59 +0.1
5,847,057 + AO353_26710 0.75 +0.1
5,847,057 + AO353_26710 0.75 +0.7
5,847,058 - AO353_26710 0.75 +0.5
5,847,058 - AO353_26710 0.75 -0.5
5,847,058 - AO353_26710 0.75 +0.8
5,847,058 - AO353_26710 0.75 -0.5
5,847,130 - AO353_26710 0.80 +1.3
5,847,130 - AO353_26710 0.80 -0.3
5,847,130 - AO353_26710 0.80 +0.6
5,847,205 - AO353_26710 0.86 +0.5
5,847,224 - AO353_26710 0.88 +0.7
5,847,224 - AO353_26710 0.88 +0.2
5,847,268 - -2.3
5,847,268 - +0.1
5,847,339 + -0.5
5,847,339 + +0.1
5,847,339 + +0.3
5,847,340 - +0.1
5,847,340 - +2.1
5,847,340 - +0.6
5,847,346 - -0.3
5,847,367 + +0.6
5,847,367 + +0.2
5,847,368 - -1.5
5,847,384 + +0.6
5,847,385 - +1.1
5,847,385 - -0.0
5,847,407 + +1.6
5,847,422 + -1.7
5,847,526 + AO353_26715 0.15 +0.4
5,847,526 + AO353_26715 0.15 -1.7
5,847,527 - AO353_26715 0.15 -0.8
5,847,527 - AO353_26715 0.15 +0.5
5,847,528 + AO353_26715 0.15 -1.3
5,847,528 + AO353_26715 0.15 +0.2
5,847,529 - AO353_26715 0.15 -0.0
5,847,529 - AO353_26715 0.15 -0.9
5,847,536 + AO353_26715 0.16 -0.8
5,847,537 - AO353_26715 0.16 -0.6
5,847,835 + AO353_26715 0.54 +0.4
5,847,836 - AO353_26715 0.55 +0.4
5,847,859 + AO353_26715 0.58 +0.5
5,847,859 + AO353_26715 0.58 +0.1
5,847,859 + AO353_26715 0.58 -0.3
5,847,859 + AO353_26715 0.58 -2.1
5,847,859 + AO353_26715 0.58 +0.9
5,847,860 - AO353_26715 0.58 -0.8
5,847,860 - AO353_26715 0.58 +0.5
5,847,968 - AO353_26715 0.72 -0.6
5,848,124 - -1.5
5,848,244 + -0.2
5,848,341 + AO353_26720 0.15 +0.1

Or see this region's nucleotide sequence