Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24805 and AO353_24810 are separated by 92 nucleotides AO353_24810 and AO353_24815 are separated by 5 nucleotides AO353_24815 and AO353_24820 overlap by 4 nucleotides
AO353_24805: AO353_24805 - TetR family transcriptional regulator, at 5,468,673 to 5,469,320
_24805
AO353_24810: AO353_24810 - transcriptional regulator, at 5,469,413 to 5,470,129
_24810
AO353_24815: AO353_24815 - amino acid ABC transporter substrate-binding protein, at 5,470,135 to 5,470,908
_24815
AO353_24820: AO353_24820 - histidine kinase, at 5,470,905 to 5,473,166
_24820
Position (kb) 5470
5471 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5469.224 kb on + strand, within AO353_24805 at 5469.341 kb on - strand at 5469.371 kb on + strand at 5469.372 kb on - strand at 5469.372 kb on - strand at 5469.375 kb on - strand at 5469.396 kb on - strand at 5469.396 kb on - strand at 5469.396 kb on - strand at 5469.473 kb on + strand at 5469.473 kb on + strand at 5469.474 kb on - strand at 5469.474 kb on - strand at 5469.477 kb on + strand at 5469.477 kb on + strand at 5469.477 kb on + strand at 5469.478 kb on - strand at 5469.658 kb on + strand, within AO353_24810 at 5469.658 kb on + strand, within AO353_24810 at 5469.707 kb on + strand, within AO353_24810 at 5469.707 kb on + strand, within AO353_24810 at 5469.707 kb on + strand, within AO353_24810 at 5469.707 kb on + strand, within AO353_24810 at 5469.707 kb on + strand, within AO353_24810 at 5469.707 kb on + strand, within AO353_24810 at 5469.708 kb on - strand, within AO353_24810 at 5469.708 kb on - strand, within AO353_24810 at 5469.708 kb on - strand, within AO353_24810 at 5469.708 kb on - strand, within AO353_24810 at 5469.708 kb on - strand, within AO353_24810 at 5469.908 kb on + strand, within AO353_24810 at 5469.924 kb on + strand, within AO353_24810 at 5469.924 kb on + strand, within AO353_24810 at 5469.925 kb on - strand, within AO353_24810 at 5469.925 kb on - strand, within AO353_24810 at 5470.134 kb on + strand at 5470.134 kb on + strand at 5470.134 kb on + strand at 5470.135 kb on - strand at 5470.391 kb on - strand, within AO353_24815 at 5470.516 kb on + strand, within AO353_24815 at 5470.517 kb on - strand, within AO353_24815 at 5470.680 kb on + strand, within AO353_24815 at 5470.681 kb on + strand, within AO353_24815 at 5470.681 kb on + strand, within AO353_24815 at 5470.682 kb on - strand, within AO353_24815 at 5470.682 kb on - strand, within AO353_24815 at 5470.744 kb on + strand, within AO353_24815 at 5470.744 kb on + strand, within AO353_24815 at 5470.745 kb on - strand, within AO353_24815 at 5470.745 kb on - strand, within AO353_24815 at 5471.004 kb on + strand at 5471.004 kb on + strand at 5471.005 kb on - strand at 5471.005 kb on - strand at 5471.250 kb on + strand, within AO353_24820 at 5471.368 kb on + strand, within AO353_24820 at 5471.368 kb on + strand, within AO353_24820 at 5471.368 kb on + strand, within AO353_24820 at 5471.368 kb on + strand, within AO353_24820 at 5471.368 kb on + strand, within AO353_24820 at 5471.369 kb on - strand, within AO353_24820 at 5471.369 kb on - strand, within AO353_24820 at 5471.409 kb on + strand, within AO353_24820 at 5471.409 kb on + strand at 5471.409 kb on + strand, within AO353_24820 at 5471.409 kb on + strand, within AO353_24820 at 5471.410 kb on - strand, within AO353_24820 at 5471.410 kb on - strand, within AO353_24820 at 5471.556 kb on - strand, within AO353_24820 at 5471.832 kb on + strand, within AO353_24820 at 5471.878 kb on - strand, within AO353_24820
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 5,469,224 + AO353_24805 0.85 +2.2 5,469,341 - -1.0 5,469,371 + -0.3 5,469,372 - +1.2 5,469,372 - -0.0 5,469,375 - +0.8 5,469,396 - +0.8 5,469,396 - +0.4 5,469,396 - -1.7 5,469,473 + +0.1 5,469,473 + -0.6 5,469,474 - -0.3 5,469,474 - -0.1 5,469,477 + -0.1 5,469,477 + +0.7 5,469,477 + -0.3 5,469,478 - -0.3 5,469,658 + AO353_24810 0.34 +0.8 5,469,658 + AO353_24810 0.34 -1.2 5,469,707 + AO353_24810 0.41 -1.5 5,469,707 + AO353_24810 0.41 -2.3 5,469,707 + AO353_24810 0.41 -0.8 5,469,707 + AO353_24810 0.41 -0.2 5,469,707 + AO353_24810 0.41 -0.8 5,469,707 + AO353_24810 0.41 +0.1 5,469,708 - AO353_24810 0.41 +0.8 5,469,708 - AO353_24810 0.41 +0.8 5,469,708 - AO353_24810 0.41 +0.4 5,469,708 - AO353_24810 0.41 -1.1 5,469,708 - AO353_24810 0.41 +0.5 5,469,908 + AO353_24810 0.69 -0.9 5,469,924 + AO353_24810 0.71 +1.3 5,469,924 + AO353_24810 0.71 -0.6 5,469,925 - AO353_24810 0.71 -0.8 5,469,925 - AO353_24810 0.71 +0.2 5,470,134 + +0.5 5,470,134 + -1.1 5,470,134 + +0.2 5,470,135 - -0.3 5,470,391 - AO353_24815 0.33 +0.7 5,470,516 + AO353_24815 0.49 -0.8 5,470,517 - AO353_24815 0.49 -0.2 5,470,680 + AO353_24815 0.70 -2.4 5,470,681 + AO353_24815 0.71 -1.4 5,470,681 + AO353_24815 0.71 -1.7 5,470,682 - AO353_24815 0.71 +0.5 5,470,682 - AO353_24815 0.71 -2.6 5,470,744 + AO353_24815 0.79 -0.1 5,470,744 + AO353_24815 0.79 -0.2 5,470,745 - AO353_24815 0.79 -1.1 5,470,745 - AO353_24815 0.79 -0.0 5,471,004 + +0.9 5,471,004 + -0.2 5,471,005 - -0.0 5,471,005 - -0.5 5,471,250 + AO353_24820 0.15 +2.0 5,471,368 + AO353_24820 0.20 +0.8 5,471,368 + AO353_24820 0.20 +0.2 5,471,368 + AO353_24820 0.20 +0.2 5,471,368 + AO353_24820 0.20 -0.5 5,471,368 + AO353_24820 0.20 +1.2 5,471,369 - AO353_24820 0.21 -0.1 5,471,369 - AO353_24820 0.21 +0.1 5,471,409 + AO353_24820 0.22 -0.6 5,471,409 + +1.2 5,471,409 + AO353_24820 0.22 +1.1 5,471,409 + AO353_24820 0.22 -2.6 5,471,410 - AO353_24820 0.22 -1.0 5,471,410 - AO353_24820 0.22 -1.0 5,471,556 - AO353_24820 0.29 +1.1 5,471,832 + AO353_24820 0.41 -2.1 5,471,878 - AO353_24820 0.43 +0.5
Or see this region's nucleotide sequence