Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3145

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3144 and DvMF_3145 are separated by 323 nucleotidesDvMF_3145 and DvMF_3146 are separated by 252 nucleotides DvMF_3144: DvMF_3144 - glycosyl transferase family 2 (RefSeq), at 3,965,662 to 3,967,359 _3144 DvMF_3145: DvMF_3145 - tRNA (uracil-5-)-methyltransferase Gid (RefSeq), at 3,967,683 to 3,969,020 _3145 DvMF_3146: DvMF_3146 - extracellular solute-binding protein family 3 (RefSeq), at 3,969,273 to 3,970,139 _3146 Position (kb) 3967 3968 3969 3970Strain fitness (log2 ratio) -1 0 1 2 3at 3966.773 kb on + strand, within DvMF_3144at 3966.871 kb on - strand, within DvMF_3144at 3966.887 kb on - strand, within DvMF_3144at 3967.074 kb on - strand, within DvMF_3144at 3967.076 kb on - strand, within DvMF_3144at 3967.093 kb on - strand, within DvMF_3144at 3967.137 kb on + strand, within DvMF_3144at 3967.268 kb on - strandat 3968.018 kb on + strand, within DvMF_3145at 3968.172 kb on + strand, within DvMF_3145at 3968.172 kb on + strand, within DvMF_3145at 3968.218 kb on + strand, within DvMF_3145at 3968.248 kb on + strand, within DvMF_3145at 3968.268 kb on - strand, within DvMF_3145at 3968.635 kb on - strand, within DvMF_3145at 3968.681 kb on - strand, within DvMF_3145at 3968.777 kb on + strand, within DvMF_3145at 3969.343 kb on - strandat 3969.352 kb on - strandat 3969.494 kb on + strand, within DvMF_3146at 3969.703 kb on + strand, within DvMF_3146at 3969.857 kb on + strand, within DvMF_3146

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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3,966,773 + DvMF_3144 0.65 -0.5
3,966,871 - DvMF_3144 0.71 -0.8
3,966,887 - DvMF_3144 0.72 +0.7
3,967,074 - DvMF_3144 0.83 -0.5
3,967,076 - DvMF_3144 0.83 +0.5
3,967,093 - DvMF_3144 0.84 -1.0
3,967,137 + DvMF_3144 0.87 -0.4
3,967,268 - +0.1
3,968,018 + DvMF_3145 0.25 -0.5
3,968,172 + DvMF_3145 0.37 +1.0
3,968,172 + DvMF_3145 0.37 +0.1
3,968,218 + DvMF_3145 0.40 +0.4
3,968,248 + DvMF_3145 0.42 +0.0
3,968,268 - DvMF_3145 0.44 -0.1
3,968,635 - DvMF_3145 0.71 +0.2
3,968,681 - DvMF_3145 0.75 -0.4
3,968,777 + DvMF_3145 0.82 -0.1
3,969,343 - +0.3
3,969,352 - +1.6
3,969,494 + DvMF_3146 0.25 +3.0
3,969,703 + DvMF_3146 0.50 +0.9
3,969,857 + DvMF_3146 0.67 +0.5

Or see this region's nucleotide sequence