Experiment: 9 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2905 and DvMF_2906 are separated by 117 nucleotides DvMF_2906 and DvMF_2907 are separated by 347 nucleotides DvMF_2907 and DvMF_2908 are separated by 169 nucleotides
DvMF_2905: DvMF_2905 - surface antigen (D15) (RefSeq), at 3,670,950 to 3,673,319
_2905
DvMF_2906: DvMF_2906 - hypothetical protein (RefSeq), at 3,673,437 to 3,674,207
_2906
DvMF_2907: DvMF_2907 - hypothetical protein (RefSeq), at 3,674,555 to 3,674,890
_2907
DvMF_2908: DvMF_2908 - MJ0042 family finger-like protein (RefSeq), at 3,675,060 to 3,676,760
_2908
Position (kb)
3673
3674
3675 Strain fitness (log2 ratio)
-1
0
1
2 at 3672.526 kb on + strand, within DvMF_2905 at 3672.717 kb on + strand, within DvMF_2905 at 3672.898 kb on + strand, within DvMF_2905 at 3673.193 kb on + strand at 3673.241 kb on + strand at 3673.361 kb on - strand at 3673.469 kb on - strand at 3673.792 kb on - strand, within DvMF_2906 at 3674.044 kb on + strand, within DvMF_2906 at 3674.112 kb on + strand, within DvMF_2906 at 3674.139 kb on - strand at 3674.577 kb on - strand at 3674.580 kb on + strand at 3674.954 kb on - strand at 3675.013 kb on + strand at 3675.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 37C remove 3,672,526 + DvMF_2905 0.66 -0.9 3,672,717 + DvMF_2905 0.75 -0.5 3,672,898 + DvMF_2905 0.82 -0.5 3,673,193 + +1.6 3,673,241 + -0.1 3,673,361 - -0.2 3,673,469 - +0.2 3,673,792 - DvMF_2906 0.46 +2.3 3,674,044 + DvMF_2906 0.79 +1.3 3,674,112 + DvMF_2906 0.88 +1.8 3,674,139 - +1.8 3,674,577 - -0.3 3,674,580 + +0.1 3,674,954 - -0.1 3,675,013 + -0.5 3,675,200 - +0.3
Or see this region's nucleotide sequence