Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2714

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2713 and DvMF_2714 are separated by 15 nucleotidesDvMF_2714 and DvMF_2715 are separated by 483 nucleotides DvMF_2713: DvMF_2713 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,434,744 to 3,436,714 _2713 DvMF_2714: DvMF_2714 - protein of unknown function DUF362 (RefSeq), at 3,436,730 to 3,437,710 _2714 DvMF_2715: DvMF_2715 - hypothetical protein (RefSeq), at 3,438,194 to 3,438,523 _2715 Position (kb) 3436 3437 3438Strain fitness (log2 ratio) -2 -1 0 1 2at 3435.845 kb on - strand, within DvMF_2713at 3435.870 kb on + strand, within DvMF_2713at 3435.880 kb on + strand, within DvMF_2713at 3435.951 kb on + strand, within DvMF_2713at 3436.136 kb on + strand, within DvMF_2713at 3436.238 kb on - strand, within DvMF_2713at 3436.318 kb on - strand, within DvMF_2713at 3436.347 kb on - strand, within DvMF_2713at 3436.421 kb on + strand, within DvMF_2713at 3436.421 kb on + strand, within DvMF_2713at 3436.451 kb on + strand, within DvMF_2713at 3436.565 kb on + strandat 3436.639 kb on - strandat 3436.773 kb on - strandat 3436.907 kb on + strand, within DvMF_2714at 3437.234 kb on - strand, within DvMF_2714at 3437.323 kb on - strand, within DvMF_2714at 3437.463 kb on + strand, within DvMF_2714at 3437.495 kb on + strand, within DvMF_2714at 3437.528 kb on - strand, within DvMF_2714at 3437.544 kb on - strand, within DvMF_2714at 3437.544 kb on - strand, within DvMF_2714at 3437.833 kb on + strandat 3437.937 kb on + strandat 3437.937 kb on + strandat 3438.103 kb on + strandat 3438.253 kb on + strand, within DvMF_2715at 3438.314 kb on + strand, within DvMF_2715at 3438.411 kb on + strand, within DvMF_2715

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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3,435,845 - DvMF_2713 0.56 +0.2
3,435,870 + DvMF_2713 0.57 -1.9
3,435,880 + DvMF_2713 0.58 +0.6
3,435,951 + DvMF_2713 0.61 -1.2
3,436,136 + DvMF_2713 0.71 +0.5
3,436,238 - DvMF_2713 0.76 -0.1
3,436,318 - DvMF_2713 0.80 -0.6
3,436,347 - DvMF_2713 0.81 -0.1
3,436,421 + DvMF_2713 0.85 +0.1
3,436,421 + DvMF_2713 0.85 -0.4
3,436,451 + DvMF_2713 0.87 -0.4
3,436,565 + -0.4
3,436,639 - +0.1
3,436,773 - +0.4
3,436,907 + DvMF_2714 0.18 -0.4
3,437,234 - DvMF_2714 0.51 -0.1
3,437,323 - DvMF_2714 0.60 +0.2
3,437,463 + DvMF_2714 0.75 -0.1
3,437,495 + DvMF_2714 0.78 -0.3
3,437,528 - DvMF_2714 0.81 +0.3
3,437,544 - DvMF_2714 0.83 +0.2
3,437,544 - DvMF_2714 0.83 +0.4
3,437,833 + -0.4
3,437,937 + -0.5
3,437,937 + +2.4
3,438,103 + -1.1
3,438,253 + DvMF_2715 0.18 +1.3
3,438,314 + DvMF_2715 0.36 -0.4
3,438,411 + DvMF_2715 0.66 +0.3

Or see this region's nucleotide sequence