Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2646

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2645 and DvMF_2646 are separated by 105 nucleotidesDvMF_2646 and DvMF_2647 are separated by 312 nucleotidesDvMF_2647 and DvMF_2648 are separated by 272 nucleotides DvMF_2645: DvMF_2645 - peptidase U32 (RefSeq), at 3,347,266 to 3,348,558 _2645 DvMF_2646: DvMF_2646 - PHP domain protein (RefSeq), at 3,348,664 to 3,349,548 _2646 DvMF_2647: DvMF_2647 - protein of unknown function DUF343 (RefSeq), at 3,349,861 to 3,350,061 _2647 DvMF_2648: DvMF_2648 - heat shock protein Hsp20 (RefSeq), at 3,350,334 to 3,350,747 _2648 Position (kb) 3348 3349 3350Strain fitness (log2 ratio) -1 0 1 2at 3347.924 kb on - strand, within DvMF_2645at 3348.026 kb on + strand, within DvMF_2645at 3348.098 kb on + strand, within DvMF_2645at 3348.306 kb on - strand, within DvMF_2645at 3348.573 kb on + strandat 3348.581 kb on - strandat 3348.696 kb on + strandat 3348.696 kb on + strandat 3348.704 kb on - strandat 3348.838 kb on - strand, within DvMF_2646at 3348.919 kb on + strand, within DvMF_2646at 3348.965 kb on + strand, within DvMF_2646at 3349.405 kb on + strand, within DvMF_2646at 3349.579 kb on + strandat 3349.587 kb on - strandat 3349.679 kb on + strandat 3349.791 kb on - strandat 3349.846 kb on + strandat 3350.054 kb on - strandat 3350.140 kb on + strandat 3350.186 kb on + strandat 3350.261 kb on + strandat 3350.505 kb on - strand, within DvMF_2648

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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3,347,924 - DvMF_2645 0.51 +0.0
3,348,026 + DvMF_2645 0.59 -0.0
3,348,098 + DvMF_2645 0.64 -0.8
3,348,306 - DvMF_2645 0.80 -0.8
3,348,573 + -0.3
3,348,581 - +0.6
3,348,696 + -0.1
3,348,696 + -0.7
3,348,704 - -0.6
3,348,838 - DvMF_2646 0.20 -0.3
3,348,919 + DvMF_2646 0.29 -0.8
3,348,965 + DvMF_2646 0.34 +0.1
3,349,405 + DvMF_2646 0.84 -0.7
3,349,579 + +2.4
3,349,587 - +0.4
3,349,679 + -1.3
3,349,791 - +0.6
3,349,846 + +1.1
3,350,054 - +0.0
3,350,140 + +0.0
3,350,186 + -0.2
3,350,261 + +0.1
3,350,505 - DvMF_2648 0.41 +1.1

Or see this region's nucleotide sequence