Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2589

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2587 and DvMF_2588 are separated by 77 nucleotidesDvMF_2588 and DvMF_2589 are separated by 236 nucleotidesDvMF_2589 and DvMF_2590 are separated by 595 nucleotides DvMF_2587: DvMF_2587 - maf protein (RefSeq), at 3,272,312 to 3,272,962 _2587 DvMF_2588: DvMF_2588 - phosphatidylglycerophosphatase A (RefSeq), at 3,273,040 to 3,273,564 _2588 DvMF_2589: DvMF_2589 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,273,801 to 3,274,532 _2589 DvMF_2590: DvMF_2590 - response regulator receiver protein (RefSeq), at 3,275,128 to 3,275,523 _2590 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -1 0 1 2at 3272.961 kb on + strandat 3272.961 kb on + strandat 3273.576 kb on - strandat 3273.610 kb on + strandat 3274.189 kb on - strand, within DvMF_2589at 3274.282 kb on + strand, within DvMF_2589at 3274.331 kb on + strand, within DvMF_2589at 3274.415 kb on + strand, within DvMF_2589at 3274.433 kb on + strand, within DvMF_2589at 3274.433 kb on + strand, within DvMF_2589at 3274.433 kb on + strand, within DvMF_2589at 3274.441 kb on - strand, within DvMF_2589at 3274.523 kb on - strandat 3274.603 kb on - strandat 3274.653 kb on - strandat 3274.754 kb on - strandat 3274.885 kb on + strandat 3275.145 kb on + strandat 3275.145 kb on + strandat 3275.145 kb on + strandat 3275.317 kb on - strand, within DvMF_2590

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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3,272,961 + +0.1
3,272,961 + +0.0
3,273,576 - +0.1
3,273,610 + +0.4
3,274,189 - DvMF_2589 0.53 +0.6
3,274,282 + DvMF_2589 0.66 +0.4
3,274,331 + DvMF_2589 0.72 -0.1
3,274,415 + DvMF_2589 0.84 +0.4
3,274,433 + DvMF_2589 0.86 +0.4
3,274,433 + DvMF_2589 0.86 -0.7
3,274,433 + DvMF_2589 0.86 +0.4
3,274,441 - DvMF_2589 0.87 +0.6
3,274,523 - +1.8
3,274,603 - +0.1
3,274,653 - +0.4
3,274,754 - -0.6
3,274,885 + -0.9
3,275,145 + +0.9
3,275,145 + -0.1
3,275,145 + -0.1
3,275,317 - DvMF_2590 0.48 -0.2

Or see this region's nucleotide sequence