Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2569

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2568 and DvMF_2569 are separated by 661 nucleotidesDvMF_2569 and DvMF_2570 are separated by 8 nucleotides DvMF_2568: DvMF_2568 - filamentation induced by cAMP protein Fic (RefSeq), at 3,245,796 to 3,247,028 _2568 DvMF_2569: DvMF_2569 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 3,247,690 to 3,248,673 _2569 DvMF_2570: DvMF_2570 - hypothetical protein (RefSeq), at 3,248,682 to 3,250,268 _2570 Position (kb) 3247 3248 3249Strain fitness (log2 ratio) -1 0 1at 3246.716 kb on + strand, within DvMF_2568at 3246.972 kb on + strandat 3246.991 kb on + strandat 3247.361 kb on + strandat 3247.708 kb on + strandat 3247.840 kb on + strand, within DvMF_2569at 3247.959 kb on + strand, within DvMF_2569at 3248.023 kb on + strand, within DvMF_2569at 3248.158 kb on - strand, within DvMF_2569at 3248.170 kb on - strand, within DvMF_2569at 3248.240 kb on + strand, within DvMF_2569at 3248.649 kb on + strandat 3248.952 kb on - strand, within DvMF_2570at 3248.952 kb on - strand, within DvMF_2570at 3249.110 kb on + strand, within DvMF_2570at 3249.118 kb on - strand, within DvMF_2570at 3249.287 kb on - strand, within DvMF_2570at 3249.292 kb on - strand, within DvMF_2570

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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3,246,716 + DvMF_2568 0.75 -0.3
3,246,972 + -0.0
3,246,991 + -0.3
3,247,361 + +0.3
3,247,708 + +0.0
3,247,840 + DvMF_2569 0.15 -0.0
3,247,959 + DvMF_2569 0.27 +0.4
3,248,023 + DvMF_2569 0.34 +0.5
3,248,158 - DvMF_2569 0.48 +0.2
3,248,170 - DvMF_2569 0.49 +0.7
3,248,240 + DvMF_2569 0.56 +0.1
3,248,649 + -1.0
3,248,952 - DvMF_2570 0.17 +0.2
3,248,952 - DvMF_2570 0.17 -0.9
3,249,110 + DvMF_2570 0.27 +0.2
3,249,118 - DvMF_2570 0.27 -0.5
3,249,287 - DvMF_2570 0.38 +0.1
3,249,292 - DvMF_2570 0.38 +1.4

Or see this region's nucleotide sequence