Experiment: 9 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2542 and DvMF_2543 are separated by 73 nucleotides DvMF_2543 and DvMF_2544 overlap by 4 nucleotides DvMF_2544 and DvMF_2545 are separated by 337 nucleotides
DvMF_2542: DvMF_2542 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,212,733 to 3,214,526
_2542
DvMF_2543: DvMF_2543 - response regulator receiver protein (RefSeq), at 3,214,600 to 3,214,965
_2543
DvMF_2544: DvMF_2544 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,214,962 to 3,216,506
_2544
DvMF_2545: DvMF_2545 - metal dependent phosphohydrolase (RefSeq), at 3,216,844 to 3,217,653
_2545
Position (kb)
3214
3215
3216
3217 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3213.964 kb on + strand, within DvMF_2542 at 3214.268 kb on + strand, within DvMF_2542 at 3214.453 kb on + strand at 3214.463 kb on + strand at 3214.482 kb on - strand at 3214.536 kb on + strand at 3214.771 kb on - strand, within DvMF_2543 at 3214.855 kb on + strand, within DvMF_2543 at 3214.986 kb on + strand at 3215.245 kb on - strand, within DvMF_2544 at 3215.476 kb on + strand, within DvMF_2544 at 3215.476 kb on + strand, within DvMF_2544 at 3215.541 kb on - strand, within DvMF_2544 at 3215.552 kb on + strand, within DvMF_2544 at 3215.898 kb on + strand, within DvMF_2544 at 3215.908 kb on + strand, within DvMF_2544 at 3216.155 kb on + strand, within DvMF_2544 at 3216.159 kb on - strand, within DvMF_2544 at 3216.160 kb on + strand, within DvMF_2544 at 3216.204 kb on - strand, within DvMF_2544 at 3216.213 kb on + strand, within DvMF_2544 at 3216.218 kb on + strand, within DvMF_2544 at 3216.221 kb on - strand, within DvMF_2544 at 3216.221 kb on - strand, within DvMF_2544 at 3216.226 kb on - strand, within DvMF_2544 at 3216.261 kb on + strand, within DvMF_2544 at 3216.358 kb on + strand at 3216.358 kb on + strand at 3216.402 kb on - strand at 3216.446 kb on - strand at 3216.565 kb on + strand at 3216.668 kb on + strand at 3216.874 kb on - strand at 3216.907 kb on + strand at 3216.930 kb on - strand, within DvMF_2545 at 3217.027 kb on + strand, within DvMF_2545 at 3217.103 kb on + strand, within DvMF_2545 at 3217.120 kb on + strand, within DvMF_2545 at 3217.120 kb on + strand, within DvMF_2545
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 37C remove 3,213,964 + DvMF_2542 0.69 +0.5 3,214,268 + DvMF_2542 0.86 -0.3 3,214,453 + -0.4 3,214,463 + +0.8 3,214,482 - +1.1 3,214,536 + -0.6 3,214,771 - DvMF_2543 0.47 -0.5 3,214,855 + DvMF_2543 0.70 -3.3 3,214,986 + -0.3 3,215,245 - DvMF_2544 0.18 -0.6 3,215,476 + DvMF_2544 0.33 -0.7 3,215,476 + DvMF_2544 0.33 -2.6 3,215,541 - DvMF_2544 0.37 -0.4 3,215,552 + DvMF_2544 0.38 -0.2 3,215,898 + DvMF_2544 0.61 -0.6 3,215,908 + DvMF_2544 0.61 -0.3 3,216,155 + DvMF_2544 0.77 -0.7 3,216,159 - DvMF_2544 0.77 -2.2 3,216,160 + DvMF_2544 0.78 +0.5 3,216,204 - DvMF_2544 0.80 +1.0 3,216,213 + DvMF_2544 0.81 -0.0 3,216,218 + DvMF_2544 0.81 -0.4 3,216,221 - DvMF_2544 0.81 +0.2 3,216,221 - DvMF_2544 0.81 -0.4 3,216,226 - DvMF_2544 0.82 -0.4 3,216,261 + DvMF_2544 0.84 -1.5 3,216,358 + +0.6 3,216,358 + +1.4 3,216,402 - -0.9 3,216,446 - -0.7 3,216,565 + +0.0 3,216,668 + +0.1 3,216,874 - -0.1 3,216,907 + -1.2 3,216,930 - DvMF_2545 0.11 -0.4 3,217,027 + DvMF_2545 0.23 -0.6 3,217,103 + DvMF_2545 0.32 +0.2 3,217,120 + DvMF_2545 0.34 -1.4 3,217,120 + DvMF_2545 0.34 +0.8
Or see this region's nucleotide sequence