Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2388

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2387 and DvMF_2388 overlap by 37 nucleotidesDvMF_2388 and DvMF_2389 are separated by 362 nucleotides DvMF_2387: DvMF_2387 - glutamate synthase (NADPH) (RefSeq), at 3,016,863 to 3,017,990 _2387 DvMF_2388: DvMF_2388 - ferredoxin-dependent glutamate synthase (RefSeq), at 3,017,954 to 3,019,588 _2388 DvMF_2389: DvMF_2389 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,019,951 to 3,022,284 _2389 Position (kb) 3017 3018 3019 3020Strain fitness (log2 ratio) -1 0 1 2at 3017.085 kb on - strand, within DvMF_2387at 3017.299 kb on + strand, within DvMF_2387at 3017.335 kb on + strand, within DvMF_2387at 3017.638 kb on - strand, within DvMF_2387at 3017.839 kb on + strand, within DvMF_2387at 3017.894 kb on + strandat 3017.927 kb on - strandat 3017.979 kb on + strandat 3018.033 kb on + strandat 3018.052 kb on + strandat 3018.097 kb on - strandat 3018.118 kb on - strand, within DvMF_2388at 3018.234 kb on - strand, within DvMF_2388at 3018.358 kb on + strand, within DvMF_2388at 3018.442 kb on - strand, within DvMF_2388at 3018.598 kb on - strand, within DvMF_2388at 3018.610 kb on + strand, within DvMF_2388at 3018.886 kb on - strand, within DvMF_2388at 3019.218 kb on - strand, within DvMF_2388at 3019.233 kb on - strand, within DvMF_2388at 3019.311 kb on - strand, within DvMF_2388at 3019.495 kb on - strandat 3019.497 kb on + strandat 3020.083 kb on + strandat 3020.093 kb on - strandat 3020.158 kb on - strandat 3020.227 kb on + strand, within DvMF_2389at 3020.257 kb on + strand, within DvMF_2389at 3020.296 kb on + strand, within DvMF_2389at 3020.296 kb on + strand, within DvMF_2389at 3020.304 kb on - strand, within DvMF_2389at 3020.448 kb on - strand, within DvMF_2389at 3020.568 kb on + strand, within DvMF_2389

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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3,017,085 - DvMF_2387 0.20 +0.1
3,017,299 + DvMF_2387 0.39 -0.4
3,017,335 + DvMF_2387 0.42 -0.6
3,017,638 - DvMF_2387 0.69 -0.5
3,017,839 + DvMF_2387 0.87 +0.6
3,017,894 + +0.6
3,017,927 - +0.1
3,017,979 + +0.1
3,018,033 + +0.7
3,018,052 + +0.6
3,018,097 - +0.5
3,018,118 - DvMF_2388 0.10 -1.2
3,018,234 - DvMF_2388 0.17 -0.9
3,018,358 + DvMF_2388 0.25 -0.4
3,018,442 - DvMF_2388 0.30 -1.2
3,018,598 - DvMF_2388 0.39 +0.0
3,018,610 + DvMF_2388 0.40 -1.3
3,018,886 - DvMF_2388 0.57 -1.4
3,019,218 - DvMF_2388 0.77 +0.3
3,019,233 - DvMF_2388 0.78 -1.2
3,019,311 - DvMF_2388 0.83 +0.1
3,019,495 - -0.2
3,019,497 + +0.6
3,020,083 + +0.1
3,020,093 - +0.2
3,020,158 - -1.2
3,020,227 + DvMF_2389 0.12 +2.0
3,020,257 + DvMF_2389 0.13 -0.3
3,020,296 + DvMF_2389 0.15 -0.2
3,020,296 + DvMF_2389 0.15 +0.3
3,020,304 - DvMF_2389 0.15 +1.0
3,020,448 - DvMF_2389 0.21 +1.1
3,020,568 + DvMF_2389 0.26 -0.4

Or see this region's nucleotide sequence