Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2375

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2374 and DvMF_2375 are separated by 199 nucleotidesDvMF_2375 and DvMF_2376 are separated by 4 nucleotides DvMF_2374: DvMF_2374 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 2,998,829 to 3,000,175 _2374 DvMF_2375: DvMF_2375 - protein of unknown function DUF208 (RefSeq), at 3,000,375 to 3,001,025 _2375 DvMF_2376: DvMF_2376 - ribonuclease, Rne/Rng family (RefSeq), at 3,001,030 to 3,002,505 _2376 Position (kb) 3000 3001 3002Strain fitness (log2 ratio) -1 0 1 2at 2999.593 kb on + strand, within DvMF_2374at 2999.599 kb on + strand, within DvMF_2374at 2999.680 kb on + strand, within DvMF_2374at 2999.699 kb on - strand, within DvMF_2374at 2999.699 kb on - strand, within DvMF_2374at 2999.863 kb on + strand, within DvMF_2374at 2999.956 kb on - strand, within DvMF_2374at 2999.987 kb on + strand, within DvMF_2374at 3000.689 kb on + strand, within DvMF_2375at 3000.702 kb on - strand, within DvMF_2375at 3000.872 kb on + strand, within DvMF_2375at 3000.913 kb on + strand, within DvMF_2375

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,999,593 + DvMF_2374 0.57 +0.4
2,999,599 + DvMF_2374 0.57 +0.4
2,999,680 + DvMF_2374 0.63 +0.7
2,999,699 - DvMF_2374 0.65 +1.2
2,999,699 - DvMF_2374 0.65 +2.0
2,999,863 + DvMF_2374 0.77 +0.3
2,999,956 - DvMF_2374 0.84 +0.7
2,999,987 + DvMF_2374 0.86 +0.1
3,000,689 + DvMF_2375 0.48 +0.1
3,000,702 - DvMF_2375 0.50 +0.3
3,000,872 + DvMF_2375 0.76 +0.0
3,000,913 + DvMF_2375 0.83 -0.2

Or see this region's nucleotide sequence