Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2364

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2362 and DvMF_2363 are separated by 77 nucleotidesDvMF_2363 and DvMF_2364 are separated by 3 nucleotidesDvMF_2364 and DvMF_2365 are separated by 611 nucleotides DvMF_2362: DvMF_2362 - protein TolA (RefSeq), at 2,982,721 to 2,983,749 _2362 DvMF_2363: DvMF_2363 - protein TolR (RefSeq), at 2,983,827 to 2,984,246 _2363 DvMF_2364: DvMF_2364 - protein TolQ (RefSeq), at 2,984,250 to 2,984,945 _2364 DvMF_2365: DvMF_2365 - outer membrane efflux protein (RefSeq), at 2,985,557 to 2,987,005 _2365 Position (kb) 2984 2985Strain fitness (log2 ratio) -3 -2 -1 0 1at 2984.980 kb on - strandat 2985.052 kb on + strandat 2985.057 kb on + strandat 2985.082 kb on + strandat 2985.095 kb on - strandat 2985.105 kb on - strandat 2985.189 kb on + strandat 2985.197 kb on - strandat 2985.645 kb on + strandat 2985.645 kb on + strandat 2985.658 kb on - strandat 2985.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,984,980 - -0.0
2,985,052 + -0.1
2,985,057 + +0.0
2,985,082 + -0.2
2,985,095 - -0.3
2,985,105 - +0.0
2,985,189 + -2.3
2,985,197 - +0.0
2,985,645 + -3.3
2,985,645 + -2.7
2,985,658 - -2.0
2,985,658 - -3.1

Or see this region's nucleotide sequence