Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2218

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2217 and DvMF_2218 are separated by 655 nucleotidesDvMF_2218 and DvMF_R0056 are separated by 572 nucleotides DvMF_2217: DvMF_2217 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 2,769,246 to 2,770,280 _2217 DvMF_2218: DvMF_2218 - Lytic transglycosylase catalytic (RefSeq), at 2,770,936 to 2,772,792 _2218 DvMF_R0056: DvMF_R0056 - 16S ribosomal RNA (RefSeq), at 2,773,365 to 2,774,900 _R0056 Position (kb) 2770 2771 2772 2773Strain fitness (log2 ratio) -1 0 1 2 3at 2770.026 kb on - strand, within DvMF_2217at 2770.026 kb on - strand, within DvMF_2217at 2770.223 kb on + strandat 2770.375 kb on - strandat 2770.797 kb on - strandat 2770.958 kb on + strandat 2770.958 kb on + strandat 2771.081 kb on - strandat 2771.116 kb on - strandat 2771.144 kb on - strand, within DvMF_2218at 2771.178 kb on + strand, within DvMF_2218at 2771.489 kb on - strand, within DvMF_2218at 2771.773 kb on - strand, within DvMF_2218at 2771.802 kb on - strand, within DvMF_2218at 2771.929 kb on - strand, within DvMF_2218at 2771.940 kb on - strand, within DvMF_2218at 2772.119 kb on - strand, within DvMF_2218at 2772.292 kb on + strand, within DvMF_2218at 2772.400 kb on - strand, within DvMF_2218at 2772.641 kb on - strandat 2772.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,770,026 - DvMF_2217 0.75 +0.4
2,770,026 - DvMF_2217 0.75 +0.5
2,770,223 + +0.5
2,770,375 - +0.6
2,770,797 - +0.2
2,770,958 + -0.1
2,770,958 + +0.6
2,771,081 - +1.4
2,771,116 - -0.9
2,771,144 - DvMF_2218 0.11 -0.2
2,771,178 + DvMF_2218 0.13 +0.4
2,771,489 - DvMF_2218 0.30 +3.0
2,771,773 - DvMF_2218 0.45 +0.3
2,771,802 - DvMF_2218 0.47 -0.0
2,771,929 - DvMF_2218 0.53 -0.3
2,771,940 - DvMF_2218 0.54 -0.4
2,772,119 - DvMF_2218 0.64 +0.2
2,772,292 + DvMF_2218 0.73 +0.3
2,772,400 - DvMF_2218 0.79 +0.5
2,772,641 - +0.3
2,772,692 + +0.6

Or see this region's nucleotide sequence