Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2192

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2190 and DvMF_2191 are separated by 27 nucleotidesDvMF_2191 and DvMF_2192 are separated by 87 nucleotidesDvMF_2192 and DvMF_2193 are separated by 97 nucleotides DvMF_2190: DvMF_2190 - phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq), at 2,735,941 to 2,736,885 _2190 DvMF_2191: DvMF_2191 - hypothetical protein (RefSeq), at 2,736,913 to 2,737,626 _2191 DvMF_2192: DvMF_2192 - protein of unknown function DUF81 (RefSeq), at 2,737,714 to 2,738,856 _2192 DvMF_2193: DvMF_2193 - protein of unknown function DUF169 (RefSeq), at 2,738,954 to 2,739,730 _2193 Position (kb) 2737 2738 2739Strain fitness (log2 ratio) -1 0 1at 2736.968 kb on - strandat 2736.973 kb on - strandat 2737.022 kb on - strand, within DvMF_2191at 2737.186 kb on + strand, within DvMF_2191at 2737.191 kb on + strand, within DvMF_2191at 2737.194 kb on - strand, within DvMF_2191at 2737.199 kb on - strand, within DvMF_2191at 2737.231 kb on - strand, within DvMF_2191at 2737.265 kb on + strand, within DvMF_2191at 2737.306 kb on + strand, within DvMF_2191at 2737.321 kb on - strand, within DvMF_2191at 2737.411 kb on - strand, within DvMF_2191at 2737.534 kb on - strand, within DvMF_2191at 2737.608 kb on - strandat 2737.638 kb on - strandat 2737.752 kb on + strandat 2738.096 kb on - strand, within DvMF_2192at 2738.142 kb on + strand, within DvMF_2192at 2738.289 kb on + strand, within DvMF_2192at 2738.316 kb on + strand, within DvMF_2192at 2738.524 kb on + strand, within DvMF_2192at 2738.656 kb on + strand, within DvMF_2192at 2738.675 kb on - strand, within DvMF_2192at 2738.680 kb on - strand, within DvMF_2192at 2738.856 kb on + strandat 2739.135 kb on - strand, within DvMF_2193at 2739.254 kb on - strand, within DvMF_2193at 2739.369 kb on + strand, within DvMF_2193at 2739.377 kb on - strand, within DvMF_2193at 2739.421 kb on + strand, within DvMF_2193at 2739.509 kb on + strand, within DvMF_2193at 2739.517 kb on - strand, within DvMF_2193at 2739.517 kb on - strand, within DvMF_2193at 2739.537 kb on + strand, within DvMF_2193at 2739.579 kb on - strand, within DvMF_2193at 2739.587 kb on - strand, within DvMF_2193at 2739.606 kb on - strand, within DvMF_2193at 2739.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,736,968 - +0.3
2,736,973 - +0.1
2,737,022 - DvMF_2191 0.15 -0.3
2,737,186 + DvMF_2191 0.38 -0.5
2,737,191 + DvMF_2191 0.39 -0.4
2,737,194 - DvMF_2191 0.39 -0.7
2,737,199 - DvMF_2191 0.40 -1.0
2,737,231 - DvMF_2191 0.45 -1.0
2,737,265 + DvMF_2191 0.49 -0.3
2,737,306 + DvMF_2191 0.55 +0.1
2,737,321 - DvMF_2191 0.57 -1.5
2,737,411 - DvMF_2191 0.70 -0.6
2,737,534 - DvMF_2191 0.87 +0.1
2,737,608 - -0.9
2,737,638 - +0.4
2,737,752 + -0.2
2,738,096 - DvMF_2192 0.33 -1.0
2,738,142 + DvMF_2192 0.37 -1.1
2,738,289 + DvMF_2192 0.50 -0.6
2,738,316 + DvMF_2192 0.53 -0.8
2,738,524 + DvMF_2192 0.71 -0.5
2,738,656 + DvMF_2192 0.82 -0.6
2,738,675 - DvMF_2192 0.84 -0.5
2,738,680 - DvMF_2192 0.85 -1.3
2,738,856 + +0.1
2,739,135 - DvMF_2193 0.23 -0.6
2,739,254 - DvMF_2193 0.39 -0.2
2,739,369 + DvMF_2193 0.53 -0.3
2,739,377 - DvMF_2193 0.54 +0.2
2,739,421 + DvMF_2193 0.60 -0.6
2,739,509 + DvMF_2193 0.71 -0.4
2,739,517 - DvMF_2193 0.72 -0.1
2,739,517 - DvMF_2193 0.72 -0.7
2,739,537 + DvMF_2193 0.75 -1.2
2,739,579 - DvMF_2193 0.80 -0.7
2,739,587 - DvMF_2193 0.81 +0.4
2,739,606 - DvMF_2193 0.84 +1.0
2,739,738 + +0.1

Or see this region's nucleotide sequence