Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2191

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2189 and DvMF_2190 overlap by 4 nucleotidesDvMF_2190 and DvMF_2191 are separated by 27 nucleotidesDvMF_2191 and DvMF_2192 are separated by 87 nucleotides DvMF_2189: DvMF_2189 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,733,764 to 2,735,944 _2189 DvMF_2190: DvMF_2190 - phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq), at 2,735,941 to 2,736,885 _2190 DvMF_2191: DvMF_2191 - hypothetical protein (RefSeq), at 2,736,913 to 2,737,626 _2191 DvMF_2192: DvMF_2192 - protein of unknown function DUF81 (RefSeq), at 2,737,714 to 2,738,856 _2192 Position (kb) 2736 2737 2738Strain fitness (log2 ratio) -1 0 1at 2736.127 kb on - strand, within DvMF_2190at 2736.146 kb on + strand, within DvMF_2190at 2736.395 kb on + strand, within DvMF_2190at 2736.403 kb on - strand, within DvMF_2190at 2736.416 kb on - strand, within DvMF_2190at 2736.436 kb on - strand, within DvMF_2190at 2736.436 kb on - strand, within DvMF_2190at 2736.499 kb on + strand, within DvMF_2190at 2736.559 kb on + strand, within DvMF_2190at 2736.968 kb on - strandat 2736.973 kb on - strandat 2737.022 kb on - strand, within DvMF_2191at 2737.186 kb on + strand, within DvMF_2191at 2737.191 kb on + strand, within DvMF_2191at 2737.194 kb on - strand, within DvMF_2191at 2737.199 kb on - strand, within DvMF_2191at 2737.231 kb on - strand, within DvMF_2191at 2737.265 kb on + strand, within DvMF_2191at 2737.306 kb on + strand, within DvMF_2191at 2737.321 kb on - strand, within DvMF_2191at 2737.411 kb on - strand, within DvMF_2191at 2737.534 kb on - strand, within DvMF_2191at 2737.608 kb on - strandat 2737.638 kb on - strandat 2737.752 kb on + strandat 2738.096 kb on - strand, within DvMF_2192at 2738.142 kb on + strand, within DvMF_2192at 2738.289 kb on + strand, within DvMF_2192at 2738.316 kb on + strand, within DvMF_2192at 2738.524 kb on + strand, within DvMF_2192

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,736,127 - DvMF_2190 0.20 -1.0
2,736,146 + DvMF_2190 0.22 -0.4
2,736,395 + DvMF_2190 0.48 +0.1
2,736,403 - DvMF_2190 0.49 -0.9
2,736,416 - DvMF_2190 0.50 -1.5
2,736,436 - DvMF_2190 0.52 -0.8
2,736,436 - DvMF_2190 0.52 -0.7
2,736,499 + DvMF_2190 0.59 -0.2
2,736,559 + DvMF_2190 0.65 -0.6
2,736,968 - +0.3
2,736,973 - +0.1
2,737,022 - DvMF_2191 0.15 -0.3
2,737,186 + DvMF_2191 0.38 -0.5
2,737,191 + DvMF_2191 0.39 -0.4
2,737,194 - DvMF_2191 0.39 -0.7
2,737,199 - DvMF_2191 0.40 -1.0
2,737,231 - DvMF_2191 0.45 -1.0
2,737,265 + DvMF_2191 0.49 -0.3
2,737,306 + DvMF_2191 0.55 +0.1
2,737,321 - DvMF_2191 0.57 -1.5
2,737,411 - DvMF_2191 0.70 -0.6
2,737,534 - DvMF_2191 0.87 +0.1
2,737,608 - -0.9
2,737,638 - +0.4
2,737,752 + -0.2
2,738,096 - DvMF_2192 0.33 -1.0
2,738,142 + DvMF_2192 0.37 -1.1
2,738,289 + DvMF_2192 0.50 -0.6
2,738,316 + DvMF_2192 0.53 -0.8
2,738,524 + DvMF_2192 0.71 -0.5

Or see this region's nucleotide sequence