Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2148

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2147 and DvMF_2148 are separated by 335 nucleotidesDvMF_2148 and DvMF_2149 overlap by 4 nucleotides DvMF_2147: DvMF_2147 - zinc resistance-associated protein (RefSeq), at 2,674,692 to 2,675,231 _2147 DvMF_2148: DvMF_2148 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,675,567 to 2,677,756 _2148 DvMF_2149: DvMF_2149 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,677,753 to 2,679,186 _2149 Position (kb) 2675 2676 2677 2678Strain fitness (log2 ratio) -1 0 1at 2674.960 kb on + strand, within DvMF_2147at 2675.010 kb on - strand, within DvMF_2147at 2675.324 kb on - strandat 2675.428 kb on + strandat 2675.602 kb on + strandat 2675.765 kb on + strandat 2675.830 kb on + strand, within DvMF_2148at 2676.059 kb on + strand, within DvMF_2148at 2676.059 kb on + strand, within DvMF_2148at 2676.059 kb on + strand, within DvMF_2148at 2676.163 kb on + strand, within DvMF_2148at 2676.451 kb on + strand, within DvMF_2148at 2676.505 kb on - strand, within DvMF_2148at 2676.512 kb on - strand, within DvMF_2148at 2676.754 kb on - strand, within DvMF_2148at 2676.840 kb on + strand, within DvMF_2148at 2676.957 kb on - strand, within DvMF_2148at 2677.334 kb on - strand, within DvMF_2148at 2677.467 kb on + strand, within DvMF_2148at 2677.594 kb on - strandat 2677.669 kb on + strandat 2677.712 kb on + strandat 2677.712 kb on + strandat 2677.804 kb on + strandat 2677.832 kb on - strandat 2678.023 kb on + strand, within DvMF_2149at 2678.088 kb on - strand, within DvMF_2149at 2678.101 kb on - strand, within DvMF_2149at 2678.218 kb on + strand, within DvMF_2149at 2678.554 kb on - strand, within DvMF_2149

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,674,960 + DvMF_2147 0.50 +0.6
2,675,010 - DvMF_2147 0.59 +0.9
2,675,324 - -1.4
2,675,428 + +0.1
2,675,602 + +0.2
2,675,765 + +0.1
2,675,830 + DvMF_2148 0.12 -0.5
2,676,059 + DvMF_2148 0.22 -0.4
2,676,059 + DvMF_2148 0.22 +1.1
2,676,059 + DvMF_2148 0.22 -0.0
2,676,163 + DvMF_2148 0.27 -0.0
2,676,451 + DvMF_2148 0.40 +0.7
2,676,505 - DvMF_2148 0.43 -0.6
2,676,512 - DvMF_2148 0.43 -0.3
2,676,754 - DvMF_2148 0.54 +0.5
2,676,840 + DvMF_2148 0.58 +0.1
2,676,957 - DvMF_2148 0.63 +1.1
2,677,334 - DvMF_2148 0.81 +1.3
2,677,467 + DvMF_2148 0.87 -0.2
2,677,594 - -0.1
2,677,669 + +0.1
2,677,712 + -0.2
2,677,712 + +1.3
2,677,804 + +0.2
2,677,832 - +0.3
2,678,023 + DvMF_2149 0.19 -1.1
2,678,088 - DvMF_2149 0.23 +0.1
2,678,101 - DvMF_2149 0.24 +0.1
2,678,218 + DvMF_2149 0.32 -0.3
2,678,554 - DvMF_2149 0.56 -0.4

Or see this region's nucleotide sequence