Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2147

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2146 and DvMF_2147 are separated by 468 nucleotidesDvMF_2147 and DvMF_2148 are separated by 335 nucleotides DvMF_2146: DvMF_2146 - delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq), at 2,671,182 to 2,674,223 _2146 DvMF_2147: DvMF_2147 - zinc resistance-associated protein (RefSeq), at 2,674,692 to 2,675,231 _2147 DvMF_2148: DvMF_2148 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,675,567 to 2,677,756 _2148 Position (kb) 2674 2675 2676Strain fitness (log2 ratio) -1 0 1 2at 2673.725 kb on + strand, within DvMF_2146at 2673.832 kb on + strand, within DvMF_2146at 2673.871 kb on - strand, within DvMF_2146at 2673.884 kb on - strand, within DvMF_2146at 2673.891 kb on - strand, within DvMF_2146at 2674.115 kb on - strandat 2674.115 kb on - strandat 2674.123 kb on + strandat 2674.248 kb on + strandat 2674.429 kb on + strandat 2674.960 kb on + strand, within DvMF_2147at 2675.010 kb on - strand, within DvMF_2147at 2675.324 kb on - strandat 2675.428 kb on + strandat 2675.602 kb on + strandat 2675.765 kb on + strandat 2675.830 kb on + strand, within DvMF_2148at 2676.059 kb on + strand, within DvMF_2148at 2676.059 kb on + strand, within DvMF_2148at 2676.059 kb on + strand, within DvMF_2148at 2676.163 kb on + strand, within DvMF_2148

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,673,725 + DvMF_2146 0.84 -0.5
2,673,832 + DvMF_2146 0.87 -0.3
2,673,871 - DvMF_2146 0.88 -0.4
2,673,884 - DvMF_2146 0.89 +0.4
2,673,891 - DvMF_2146 0.89 -0.1
2,674,115 - +2.3
2,674,115 - -0.2
2,674,123 + -0.3
2,674,248 + -0.3
2,674,429 + -0.5
2,674,960 + DvMF_2147 0.50 +0.6
2,675,010 - DvMF_2147 0.59 +0.9
2,675,324 - -1.4
2,675,428 + +0.1
2,675,602 + +0.2
2,675,765 + +0.1
2,675,830 + DvMF_2148 0.12 -0.5
2,676,059 + DvMF_2148 0.22 -0.4
2,676,059 + DvMF_2148 0.22 +1.1
2,676,059 + DvMF_2148 0.22 -0.0
2,676,163 + DvMF_2148 0.27 -0.0

Or see this region's nucleotide sequence