Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2146

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2144 and DvMF_2145 overlap by 4 nucleotidesDvMF_2145 and DvMF_2146 are separated by 325 nucleotidesDvMF_2146 and DvMF_2147 are separated by 468 nucleotides DvMF_2144: DvMF_2144 - GCN5-related N-acetyltransferase (RefSeq), at 2,670,048 to 2,670,587 _2144 DvMF_2145: DvMF_2145 - Protein of unknown function DUF1778 (RefSeq), at 2,670,584 to 2,670,856 _2145 DvMF_2146: DvMF_2146 - delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq), at 2,671,182 to 2,674,223 _2146 DvMF_2147: DvMF_2147 - zinc resistance-associated protein (RefSeq), at 2,674,692 to 2,675,231 _2147 Position (kb) 2671 2672 2673 2674 2675Strain fitness (log2 ratio) -2 -1 0 1 2at 2670.281 kb on + strand, within DvMF_2144at 2670.416 kb on - strand, within DvMF_2144at 2670.755 kb on + strand, within DvMF_2145at 2671.187 kb on - strandat 2671.370 kb on + strandat 2671.456 kb on - strandat 2671.875 kb on - strand, within DvMF_2146at 2672.386 kb on - strand, within DvMF_2146at 2672.772 kb on - strand, within DvMF_2146at 2672.947 kb on + strand, within DvMF_2146at 2672.955 kb on - strand, within DvMF_2146at 2672.993 kb on - strand, within DvMF_2146at 2673.356 kb on - strand, within DvMF_2146at 2673.372 kb on + strand, within DvMF_2146at 2673.448 kb on - strand, within DvMF_2146at 2673.478 kb on - strand, within DvMF_2146at 2673.590 kb on + strand, within DvMF_2146at 2673.637 kb on - strand, within DvMF_2146at 2673.725 kb on + strand, within DvMF_2146at 2673.832 kb on + strand, within DvMF_2146at 2673.871 kb on - strand, within DvMF_2146at 2673.884 kb on - strand, within DvMF_2146at 2673.891 kb on - strand, within DvMF_2146at 2674.115 kb on - strandat 2674.115 kb on - strandat 2674.123 kb on + strandat 2674.248 kb on + strandat 2674.429 kb on + strandat 2674.960 kb on + strand, within DvMF_2147at 2675.010 kb on - strand, within DvMF_2147

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,670,281 + DvMF_2144 0.43 +0.3
2,670,416 - DvMF_2144 0.68 -0.0
2,670,755 + DvMF_2145 0.63 -1.8
2,671,187 - -0.7
2,671,370 + +0.8
2,671,456 - -0.4
2,671,875 - DvMF_2146 0.23 -0.1
2,672,386 - DvMF_2146 0.40 -0.2
2,672,772 - DvMF_2146 0.52 -0.2
2,672,947 + DvMF_2146 0.58 -0.6
2,672,955 - DvMF_2146 0.58 +0.2
2,672,993 - DvMF_2146 0.60 -0.1
2,673,356 - DvMF_2146 0.71 +0.1
2,673,372 + DvMF_2146 0.72 -0.5
2,673,448 - DvMF_2146 0.74 +0.5
2,673,478 - DvMF_2146 0.75 +0.4
2,673,590 + DvMF_2146 0.79 +0.4
2,673,637 - DvMF_2146 0.81 +0.4
2,673,725 + DvMF_2146 0.84 -0.5
2,673,832 + DvMF_2146 0.87 -0.3
2,673,871 - DvMF_2146 0.88 -0.4
2,673,884 - DvMF_2146 0.89 +0.4
2,673,891 - DvMF_2146 0.89 -0.1
2,674,115 - +2.3
2,674,115 - -0.2
2,674,123 + -0.3
2,674,248 + -0.3
2,674,429 + -0.5
2,674,960 + DvMF_2147 0.50 +0.6
2,675,010 - DvMF_2147 0.59 +0.9

Or see this region's nucleotide sequence