Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2018

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2017 and DvMF_2018 overlap by 4 nucleotidesDvMF_2018 and DvMF_2019 are separated by 271 nucleotides DvMF_2017: DvMF_2017 - sulfate transporter (RefSeq), at 2,497,245 to 2,499,437 _2017 DvMF_2018: DvMF_2018 - hypothetical protein (RefSeq), at 2,499,434 to 2,500,591 _2018 DvMF_2019: DvMF_2019 - dihydrouridine synthase DuS (RefSeq), at 2,500,863 to 2,501,918 _2019 Position (kb) 2499 2500 2501Strain fitness (log2 ratio) -2 -1 0 1 2at 2498.513 kb on + strand, within DvMF_2017at 2498.692 kb on + strand, within DvMF_2017at 2498.700 kb on - strand, within DvMF_2017at 2498.913 kb on - strand, within DvMF_2017at 2498.934 kb on - strand, within DvMF_2017at 2498.942 kb on + strand, within DvMF_2017at 2498.942 kb on + strand, within DvMF_2017at 2498.942 kb on + strand, within DvMF_2017at 2499.118 kb on + strand, within DvMF_2017at 2499.502 kb on + strandat 2499.745 kb on - strand, within DvMF_2018at 2499.962 kb on + strand, within DvMF_2018at 2500.050 kb on - strand, within DvMF_2018at 2500.050 kb on - strand, within DvMF_2018at 2500.050 kb on - strand, within DvMF_2018at 2500.196 kb on + strand, within DvMF_2018at 2500.366 kb on + strand, within DvMF_2018at 2500.396 kb on - strand, within DvMF_2018at 2500.424 kb on + strand, within DvMF_2018at 2500.683 kb on - strandat 2500.769 kb on + strandat 2501.028 kb on - strand, within DvMF_2019at 2501.105 kb on + strand, within DvMF_2019at 2501.113 kb on - strand, within DvMF_2019at 2501.113 kb on - strand, within DvMF_2019at 2501.178 kb on - strand, within DvMF_2019at 2501.206 kb on - strand, within DvMF_2019at 2501.207 kb on + strand, within DvMF_2019at 2501.456 kb on - strand, within DvMF_2019at 2501.501 kb on + strand, within DvMF_2019at 2501.544 kb on + strand, within DvMF_2019at 2501.544 kb on + strand, within DvMF_2019

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,498,513 + DvMF_2017 0.58 -0.9
2,498,692 + DvMF_2017 0.66 -0.1
2,498,700 - DvMF_2017 0.66 +1.8
2,498,913 - DvMF_2017 0.76 -0.3
2,498,934 - DvMF_2017 0.77 +0.1
2,498,942 + DvMF_2017 0.77 +0.0
2,498,942 + DvMF_2017 0.77 -0.2
2,498,942 + DvMF_2017 0.77 -0.3
2,499,118 + DvMF_2017 0.85 +0.3
2,499,502 + +0.5
2,499,745 - DvMF_2018 0.27 +0.4
2,499,962 + DvMF_2018 0.46 +0.2
2,500,050 - DvMF_2018 0.53 -0.5
2,500,050 - DvMF_2018 0.53 +0.3
2,500,050 - DvMF_2018 0.53 +0.3
2,500,196 + DvMF_2018 0.66 -0.2
2,500,366 + DvMF_2018 0.80 +0.6
2,500,396 - DvMF_2018 0.83 -0.2
2,500,424 + DvMF_2018 0.85 -0.4
2,500,683 - -0.1
2,500,769 + +0.4
2,501,028 - DvMF_2019 0.16 +0.3
2,501,105 + DvMF_2019 0.23 +0.5
2,501,113 - DvMF_2019 0.24 -0.1
2,501,113 - DvMF_2019 0.24 -1.0
2,501,178 - DvMF_2019 0.30 +0.8
2,501,206 - DvMF_2019 0.32 -1.9
2,501,207 + DvMF_2019 0.33 +0.1
2,501,456 - DvMF_2019 0.56 -1.6
2,501,501 + DvMF_2019 0.60 +0.2
2,501,544 + DvMF_2019 0.64 +0.1
2,501,544 + DvMF_2019 0.64 +0.3

Or see this region's nucleotide sequence