Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1937

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1936 and DvMF_1937 are separated by 136 nucleotidesDvMF_1937 and DvMF_1938 are separated by 493 nucleotides DvMF_1936: DvMF_1936 - Deoxyribodipyrimidine photo-lyase (RefSeq), at 2,388,937 to 2,390,421 _1936 DvMF_1937: DvMF_1937 - response regulator receiver protein (RefSeq), at 2,390,558 to 2,391,367 _1937 DvMF_1938: DvMF_1938 - DNA polymerase III, delta prime subunit, putative (RefSeq), at 2,391,861 to 2,392,826 _1938 Position (kb) 2390 2391 2392Strain fitness (log2 ratio) -2 -1 0 1at 2389.652 kb on - strand, within DvMF_1936at 2389.903 kb on + strand, within DvMF_1936at 2389.908 kb on + strand, within DvMF_1936at 2390.119 kb on + strand, within DvMF_1936at 2390.147 kb on - strand, within DvMF_1936at 2390.295 kb on - strandat 2390.521 kb on + strandat 2390.622 kb on - strandat 2391.126 kb on + strand, within DvMF_1937at 2391.216 kb on - strand, within DvMF_1937at 2391.391 kb on + strandat 2391.702 kb on + strandat 2391.715 kb on - strandat 2391.725 kb on - strandat 2391.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,389,652 - DvMF_1936 0.48 +0.1
2,389,903 + DvMF_1936 0.65 -0.2
2,389,908 + DvMF_1936 0.65 -0.1
2,390,119 + DvMF_1936 0.80 -0.5
2,390,147 - DvMF_1936 0.81 -0.3
2,390,295 - -0.1
2,390,521 + -0.1
2,390,622 - -0.4
2,391,126 + DvMF_1937 0.70 -0.6
2,391,216 - DvMF_1937 0.81 -0.2
2,391,391 + -2.2
2,391,702 + +1.0
2,391,715 - -0.6
2,391,725 - +0.3
2,391,740 - -0.6

Or see this region's nucleotide sequence