Experiment: 9 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1919 and DvMF_1920 are separated by 12 nucleotides DvMF_1920 and DvMF_1921 are separated by 211 nucleotides DvMF_1921 and DvMF_1922 are separated by 134 nucleotides
DvMF_1919: DvMF_1919 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 2,365,465 to 2,366,136
_1919
DvMF_1920: DvMF_1920 - ABC transporter related (RefSeq), at 2,366,149 to 2,366,898
_1920
DvMF_1921: DvMF_1921 - A/G-specific adenine glycosylase (RefSeq), at 2,367,110 to 2,368,414
_1921
DvMF_1922: DvMF_1922 - hypothetical protein (RefSeq), at 2,368,549 to 2,371,248
_1922
Position (kb)
2367
2368
2369 Strain fitness (log2 ratio)
-1
0
1 at 2366.112 kb on + strand at 2366.225 kb on + strand, within DvMF_1920 at 2366.225 kb on + strand, within DvMF_1920 at 2366.233 kb on - strand, within DvMF_1920 at 2366.459 kb on + strand, within DvMF_1920 at 2366.872 kb on + strand at 2366.910 kb on - strand at 2367.046 kb on - strand at 2367.178 kb on + strand at 2367.348 kb on + strand, within DvMF_1921 at 2367.572 kb on - strand, within DvMF_1921 at 2367.956 kb on - strand, within DvMF_1921 at 2368.722 kb on - strand at 2368.843 kb on - strand, within DvMF_1922 at 2368.891 kb on + strand, within DvMF_1922 at 2369.275 kb on + strand, within DvMF_1922
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 37C remove 2,366,112 + -0.3 2,366,225 + DvMF_1920 0.10 -0.4 2,366,225 + DvMF_1920 0.10 -0.2 2,366,233 - DvMF_1920 0.11 +0.3 2,366,459 + DvMF_1920 0.41 -0.3 2,366,872 + -0.3 2,366,910 - -1.2 2,367,046 - +0.1 2,367,178 + +0.5 2,367,348 + DvMF_1921 0.18 -0.0 2,367,572 - DvMF_1921 0.35 +0.0 2,367,956 - DvMF_1921 0.65 +1.7 2,368,722 - -1.1 2,368,843 - DvMF_1922 0.11 +0.3 2,368,891 + DvMF_1922 0.13 -0.1 2,369,275 + DvMF_1922 0.27 +0.0
Or see this region's nucleotide sequence