Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1913

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1913 and DvMF_1914 are separated by 235 nucleotides DvMF_1913: DvMF_1913 - hypothetical protein (RefSeq), at 2,358,890 to 2,359,222 _1913 DvMF_1914: DvMF_1914 - protein of unknown function DUF939 (RefSeq), at 2,359,458 to 2,360,645 _1914 Position (kb) 2358 2359 2360Strain fitness (log2 ratio) -1 0 1 2at 2358.013 kb on + strandat 2358.140 kb on - strandat 2358.326 kb on + strandat 2358.372 kb on - strandat 2358.478 kb on - strandat 2358.478 kb on - strandat 2358.809 kb on - strandat 2358.879 kb on - strandat 2358.903 kb on + strandat 2358.958 kb on - strand, within DvMF_1913at 2359.091 kb on - strand, within DvMF_1913at 2359.298 kb on + strandat 2359.439 kb on + strandat 2359.547 kb on + strandat 2359.555 kb on - strandat 2359.752 kb on - strand, within DvMF_1914at 2359.752 kb on - strand, within DvMF_1914at 2359.826 kb on - strand, within DvMF_1914at 2359.912 kb on + strand, within DvMF_1914at 2360.093 kb on + strand, within DvMF_1914at 2360.134 kb on + strand, within DvMF_1914at 2360.206 kb on + strand, within DvMF_1914

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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2,358,013 + +0.2
2,358,140 - +0.5
2,358,326 + +0.5
2,358,372 - +1.1
2,358,478 - +0.7
2,358,478 - -0.4
2,358,809 - +0.1
2,358,879 - +0.2
2,358,903 + -0.1
2,358,958 - DvMF_1913 0.20 +0.2
2,359,091 - DvMF_1913 0.60 +0.0
2,359,298 + -0.0
2,359,439 + -0.2
2,359,547 + +2.6
2,359,555 - -0.6
2,359,752 - DvMF_1914 0.25 +0.1
2,359,752 - DvMF_1914 0.25 +0.9
2,359,826 - DvMF_1914 0.31 +2.4
2,359,912 + DvMF_1914 0.38 -1.6
2,360,093 + DvMF_1914 0.53 +0.4
2,360,134 + DvMF_1914 0.57 +0.5
2,360,206 + DvMF_1914 0.63 -0.4

Or see this region's nucleotide sequence